Wall clock time and date at job start Thu Apr 9 2020 14:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39800 * 126.22784 * 2 1 4 4 C 1.27150 * 114.31344 * 185.01500 * 3 2 1 5 5 C 1.52386 * 109.41511 * 0.91932 * 4 3 2 6 6 H 1.08999 * 109.76353 * 236.96913 * 5 4 3 7 7 C 1.51559 * 107.91380 * 117.38818 * 5 4 3 8 8 C 1.52232 * 112.87935 * 210.91215 * 7 5 4 9 9 C 1.53468 * 107.99369 * 58.58963 * 8 7 5 10 10 C 1.52527 * 107.56741 * 291.34430 * 9 8 7 11 11 H 1.09003 * 108.71482 * 293.75914 * 10 9 8 12 12 C 1.50695 * 108.70963 * 175.62160 * 10 9 8 13 13 H 1.08003 * 120.00157 * 325.61430 * 12 10 9 14 14 C 1.37880 * 119.99861 * 145.34251 * 12 10 9 15 15 N 1.31524 * 119.99825 * 173.78365 * 14 12 10 16 16 Si 1.86794 * 120.00192 * 353.78392 * 14 12 10 17 17 H 1.48496 * 109.47397 * 84.66591 * 16 14 12 18 18 H 1.48502 * 109.47010 * 204.66675 * 16 14 12 19 19 H 1.48498 * 109.47238 * 324.66456 * 16 14 12 20 20 C 1.46526 * 126.23555 * 180.02562 * 2 1 3 21 21 H 1.08997 * 104.79168 * 282.82797 * 20 2 1 22 22 H 1.08997 * 109.47186 * 95.31950 * 1 2 3 23 23 H 1.08995 * 109.46786 * 215.32008 * 1 2 3 24 24 H 1.09000 * 109.46833 * 335.32075 * 1 2 3 25 25 H 1.08002 * 125.28610 * 180.90159 * 4 3 2 26 26 H 1.08995 * 108.79890 * 90.03327 * 7 5 4 27 27 H 1.09003 * 108.70734 * 331.72658 * 7 5 4 28 28 H 1.08996 * 109.76187 * 298.96283 * 8 7 5 29 29 H 1.08997 * 109.75354 * 178.20824 * 8 7 5 30 30 H 1.08996 * 109.83586 * 171.83176 * 9 8 7 31 31 H 1.09002 * 109.89555 * 50.89124 * 9 8 7 32 32 H 0.97003 * 119.99664 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2912 1.1277 0.0000 4 6 3.5318 0.8678 -0.1013 5 6 3.7259 -0.6392 -0.2163 6 1 4.3839 -0.9879 0.5796 7 6 4.3557 -0.9266 -1.5646 8 6 3.9457 -2.2778 -2.1335 9 6 2.4167 -2.2930 -2.2639 10 6 1.8345 -2.3030 -0.8541 11 1 2.0951 -3.2467 -0.3748 12 6 0.3335 -2.2091 -0.9503 13 1 -0.1218 -1.6269 -1.7378 14 6 -0.4586 -2.8712 -0.0363 15 7 -1.7616 -2.6923 -0.0440 16 14 0.3188 -4.0220 1.2128 17 1 0.7830 -3.2388 2.3859 18 1 -0.6839 -5.0252 1.6528 19 1 1.4753 -4.7173 0.5928 20 6 2.3312 -1.1819 -0.0005 21 1 2.3069 -1.5451 1.0269 22 1 -0.3633 -0.0953 -1.0232 23 1 -0.3633 -0.8385 0.5941 24 1 -0.3633 0.9338 0.4291 25 1 4.3245 1.6013 -0.1054 26 1 5.4401 -0.9049 -1.4574 27 1 4.0566 -0.1456 -2.2637 28 1 4.2661 -3.0734 -1.4609 29 1 4.4005 -2.4179 -3.1141 30 1 2.1002 -3.1870 -2.8011 31 1 2.0809 -1.4032 -2.7965 32 1 -2.3189 -3.1583 0.5988 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261227618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:13 Heat of formation + Delta-G solvation = 65.345590 kcal Electronic energy + Delta-G solvation = -14668.126614 eV Core-core repulsion = 12437.270243 eV Total energy + Delta-G solvation = -2230.856371 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.84511 -35.44826 -33.98401 -31.40008 -29.43627 -29.24088 -26.05634 -23.82312 -21.58353 -21.20846 -19.51413 -18.07826 -17.06545 -15.48950 -15.05811 -14.26172 -14.07497 -13.27792 -13.09973 -12.93559 -12.60267 -12.30262 -11.78586 -11.37995 -11.33211 -11.12374 -10.87204 -10.56795 -10.42584 -10.37434 -9.91461 -9.60075 -9.31977 -9.08810 -8.79622 -8.28873 -6.57596 -6.18049 -4.08564 3.13243 3.22183 3.29946 3.31338 3.94378 4.32760 5.05932 5.08433 5.29329 5.41191 5.54590 5.73949 5.97940 6.07740 6.16349 6.23050 6.31330 6.42990 6.59345 6.67970 6.68334 6.75685 6.94812 7.05993 7.23903 7.30938 7.36123 7.57799 7.70839 8.37842 8.52873 8.84205 9.12852 9.42582 10.92536 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.033015 B = 0.015580 C = 0.012991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.887571 B = 1796.701045 C = 2154.820918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.517 5.517 3 N -0.234 5.234 4 C -0.030 4.030 5 C -0.090 4.090 6 H 0.077 0.923 7 C -0.095 4.095 8 C -0.124 4.124 9 C -0.095 4.095 10 C 0.002 3.998 11 H 0.042 0.958 12 C -0.499 4.499 13 H 0.081 0.919 14 C 0.067 3.933 15 N -0.892 5.892 16 Si 0.867 3.133 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.143 3.857 21 H 0.023 0.977 22 H 0.050 0.950 23 H 0.095 0.905 24 H 0.020 0.980 25 H 0.174 0.826 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.022 1.839 -0.602 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.335 5.335 3 N -0.039 5.039 4 C -0.245 4.245 5 C -0.111 4.111 6 H 0.095 0.905 7 C -0.134 4.134 8 C -0.161 4.161 9 C -0.133 4.133 10 C -0.018 4.018 11 H 0.060 0.940 12 C -0.537 4.537 13 H 0.099 0.901 14 C -0.135 4.135 15 N -0.530 5.530 16 Si 0.695 3.305 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.190 1.190 20 C 0.037 3.963 21 H 0.041 0.959 22 H 0.068 0.932 23 H 0.113 0.887 24 H 0.039 0.961 25 H 0.191 0.809 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.844 2.449 -0.376 9.185 hybrid contribution 0.847 -1.333 0.739 1.744 sum 9.692 1.116 0.363 9.762 Atomic orbital electron populations 1.21567 0.73770 0.99406 1.02110 1.51103 1.04064 0.97505 1.80796 1.73508 1.04755 1.18671 1.06931 1.26323 0.93974 0.95618 1.08629 1.21157 0.97340 0.94394 0.98250 0.90518 1.20954 0.98751 0.97900 0.95795 1.21585 0.98229 0.96745 0.99575 1.21463 0.92327 1.00909 0.98589 1.18684 0.97348 0.93276 0.92520 0.94030 1.21046 0.88086 1.30561 1.14031 0.90095 1.24990 0.94801 0.96578 0.97118 1.69901 1.03780 1.42579 1.36714 0.86969 0.79400 0.81942 0.82187 1.20225 1.21425 1.18953 1.20557 0.87083 0.89536 0.99100 0.95938 0.93166 0.88703 0.96131 0.80918 0.92783 0.92381 0.92484 0.92824 0.92549 0.92907 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.13 9.34 59.85 0.56 4.68 16 2 N -0.52 -12.00 4.22 -117.49 -0.50 -12.49 16 3 N -0.23 -4.92 12.02 32.40 0.39 -4.54 16 4 C -0.03 -0.53 11.23 -13.38 -0.15 -0.68 16 5 C -0.09 -1.59 3.28 -92.57 -0.30 -1.90 16 6 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 7 C -0.10 -1.48 5.28 -27.85 -0.15 -1.63 16 8 C -0.12 -2.01 5.98 -26.88 -0.16 -2.17 16 9 C -0.10 -1.90 5.27 -26.73 -0.14 -2.04 16 10 C 0.00 0.04 1.76 -93.79 -0.17 -0.12 16 11 H 0.04 0.97 5.00 -51.93 -0.26 0.71 16 12 C -0.50 -12.96 5.33 -34.44 -0.18 -13.15 16 13 H 0.08 2.31 6.51 -52.48 -0.34 1.97 16 14 C 0.07 1.78 3.64 -17.81 -0.06 1.71 16 15 N -0.89 -25.07 13.59 55.43 0.75 -24.32 16 16 Si 0.87 20.80 26.83 -169.99 -4.56 16.24 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.26 -6.13 6.33 56.52 0.36 -5.77 16 20 C 0.14 3.15 2.97 -70.59 -0.21 2.94 16 21 H 0.02 0.53 7.59 -51.93 -0.39 0.14 16 22 H 0.05 1.27 6.16 -51.93 -0.32 0.95 16 23 H 0.09 2.47 4.90 -51.93 -0.25 2.21 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.17 2.28 8.06 -52.49 -0.42 1.85 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 28 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.11 8.11 -51.93 -0.42 0.69 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 242.41 15.07 3.65 3.65 Total: -1.00 -28.13 242.41 -5.75 -33.88 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.53 Total: -0.08 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.97 Total: -12.35 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.65 Total: -41.35 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.56 Total: 16.24 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.13 -5.75 -33.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.228 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds