Wall clock time and date at job start Thu Apr 9 2020 14:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00295 * 2 1 4 4 H 1.48494 * 109.47357 * 240.00289 * 3 2 1 5 5 H 1.48498 * 109.46812 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47055 * 119.99927 * 3 2 1 7 7 C 1.37880 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47188 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47310 * 179.97438 * 10 9 7 12 12 N 1.39962 * 119.88267 * 270.00058 * 11 10 9 13 13 C 1.31092 * 120.72220 * 179.97438 * 12 11 10 14 14 N 1.39416 * 119.76610 * 179.97438 * 13 12 11 15 15 C 1.40882 * 120.46451 * 0.02562 * 13 12 11 16 16 C 1.35954 * 119.73289 * 359.97438 * 15 13 12 17 17 C 1.34810 * 119.88860 * 89.71902 * 11 10 9 18 18 O 1.22107 * 120.22392 * 0.02562 * 17 11 10 19 19 H 0.97001 * 120.00225 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47577 * 59.99446 * 9 7 2 21 21 H 1.08997 * 109.47113 * 299.99511 * 9 7 2 22 22 H 1.09001 * 109.47466 * 59.99800 * 10 9 7 23 23 H 1.09007 * 109.47318 * 299.99240 * 10 9 7 24 24 H 0.97001 * 119.99856 * 0.02562 * 14 13 12 25 25 H 0.96993 * 120.00030 * 179.97438 * 14 13 12 26 26 H 1.08004 * 120.13331 * 179.97438 * 15 13 12 27 27 H 1.08004 * 120.35436 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 7 1.1644 -5.5344 1.2150 13 6 0.5086 -6.6693 1.2347 14 7 0.1724 -7.2532 2.4553 15 6 0.1422 -7.3036 0.0313 16 6 0.4710 -6.7338 -1.1585 17 6 1.1715 -5.5101 -1.1673 18 8 1.4712 -4.9811 -2.2263 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.8719 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8896 24 1 0.4233 -6.8196 3.2859 25 1 -0.3131 -8.0927 2.4738 26 1 -0.3976 -8.2388 0.0539 27 1 0.1948 -7.2112 -2.0871 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161143322.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:50 Heat of formation + Delta-G solvation = -0.211425 kcal Electronic energy + Delta-G solvation = -13242.585828 eV Core-core repulsion = 10807.627685 eV Total energy + Delta-G solvation = -2434.958142 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.81532 -38.68372 -36.68422 -35.18262 -34.03537 -32.31439 -30.35435 -27.30874 -25.36355 -23.95107 -22.75954 -19.49592 -18.99516 -18.25649 -17.56714 -16.87637 -16.63986 -16.37600 -15.99209 -14.92048 -14.49195 -14.39843 -14.27214 -14.26148 -13.59513 -12.84553 -12.77327 -12.23060 -12.11446 -11.96867 -11.46769 -11.06277 -10.69559 -10.63516 -10.60178 -8.88603 -8.24863 -6.38934 -0.40565 1.06600 1.20973 1.39742 1.44726 1.52448 2.39273 2.51904 2.68552 3.08448 3.44219 3.79946 4.01572 4.34170 4.49734 4.65541 4.74795 4.80721 5.06647 5.10013 5.39045 5.47704 5.73262 6.09434 6.30286 6.58840 6.74669 6.91598 7.30604 7.35890 8.87921 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.047753 B = 0.007515 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.213265 B = 3725.175961 C = 4014.110053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.031 3.969 10 C 0.148 3.852 11 N -0.397 5.397 12 N -0.345 5.345 13 C 0.349 3.651 14 N -0.815 5.815 15 C -0.075 4.075 16 C -0.159 4.159 17 C 0.461 3.539 18 O -0.604 6.604 19 H 0.266 0.734 20 H -0.023 1.023 21 H -0.005 1.005 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.412 0.588 25 H 0.431 0.569 26 H 0.208 0.792 27 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -17.973 5.308 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.027 3.973 11 N -0.214 5.214 12 N -0.175 5.175 13 C 0.078 3.922 14 N -0.371 5.371 15 C -0.099 4.099 16 C -0.188 4.188 17 C 0.257 3.743 18 O -0.487 6.487 19 H 0.074 0.926 20 H -0.005 1.005 21 H 0.013 0.987 22 H 0.111 0.889 23 H 0.095 0.905 24 H 0.242 0.758 25 H 0.266 0.734 26 H 0.225 0.775 27 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.320 -16.866 5.179 17.646 hybrid contribution -0.268 0.494 -0.403 0.692 sum -0.588 -16.371 4.776 17.064 Atomic orbital electron populations 1.70126 1.08185 1.28147 1.50986 1.26086 0.95828 1.03811 0.94079 0.85320 0.78124 0.77036 0.79460 1.19179 1.20627 1.18379 1.21467 0.93882 0.91359 1.51759 0.91121 1.19133 0.94330 0.92881 0.94381 1.21623 0.94217 0.78957 1.02551 1.49334 1.48799 1.21307 1.01912 1.75002 1.23083 1.12757 1.06661 1.19555 0.92816 0.89844 0.89979 1.41830 1.64740 1.28038 1.02512 1.22244 0.96750 1.01941 0.89014 1.22749 0.99794 0.93806 1.02409 1.18561 0.83254 0.88750 0.83699 1.90941 1.59328 1.67926 1.30512 0.92568 1.00486 0.98662 0.88921 0.90479 0.75784 0.73376 0.77479 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.01 13.29 21.45 0.28 -59.73 15 2 C 0.00 0.00 5.46 84.66 0.46 0.46 15 3 Si 0.98 45.94 29.54 68.60 2.03 47.97 15 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 15 7 C -0.55 -33.15 9.11 25.60 0.23 -32.92 15 8 H 0.07 4.00 7.74 -2.91 -0.02 3.98 15 9 C 0.03 1.83 5.30 29.85 0.16 1.98 15 10 C 0.15 7.23 5.64 86.38 0.49 7.72 15 11 N -0.40 -17.26 3.51 -472.29 -1.66 -18.91 15 12 N -0.35 -12.40 11.59 -54.68 -0.63 -13.04 15 13 C 0.35 8.35 7.87 133.74 1.05 9.40 15 14 N -0.82 -10.76 9.10 -54.75 -0.50 -11.26 15 15 C -0.07 -1.39 9.90 22.39 0.22 -1.17 15 16 C -0.16 -4.34 10.00 22.42 0.22 -4.11 15 17 C 0.46 19.45 7.50 84.91 0.64 20.09 15 18 O -0.60 -30.95 16.71 -5.67 -0.09 -31.05 15 19 H 0.27 15.88 8.31 -92.71 -0.77 15.11 15 20 H -0.02 -1.57 8.14 -2.38 -0.02 -1.58 15 21 H 0.00 -0.32 8.14 -2.39 -0.02 -0.34 15 22 H 0.09 4.18 8.14 -2.39 -0.02 4.17 15 23 H 0.08 3.87 7.43 -2.38 -0.02 3.86 15 24 H 0.41 5.43 8.95 -92.71 -0.83 4.60 15 25 H 0.43 1.88 8.84 -92.71 -0.82 1.06 15 26 H 0.21 1.18 8.06 -2.91 -0.02 1.15 15 27 H 0.19 3.85 8.06 -2.91 -0.02 3.83 15 Total: -1.00 -85.44 247.64 2.46 -82.98 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -0.44 Total: 1.58 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 3.48 Total: 1.46 kcal Atomic # 7 Polarization: -100.43 SS G_CDS: -2.50 Total: -102.94 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.09 Total: -31.05 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -85.44 2.46 -82.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161143322.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.773 kcal (2) G-P(sol) polarization free energy of solvation -85.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds