Wall clock time and date at job start Thu Apr 9 2020 14:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00229 * 2 1 4 4 H 1.48504 * 109.47013 * 269.99655 * 3 2 1 5 5 H 1.48493 * 109.47418 * 29.99970 * 3 2 1 6 6 H 1.48501 * 109.46864 * 149.99920 * 3 2 1 7 7 C 1.37877 * 119.99264 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00486 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99513 * 180.02562 * 7 2 1 10 10 H 1.08994 * 112.96327 * 52.13980 * 9 7 2 11 11 C 1.53945 * 113.75777 * 280.49193 * 9 7 2 12 12 C 1.53931 * 86.34196 * 221.96545 * 11 9 7 13 13 N 1.47964 * 86.18468 * 23.72046 * 12 11 9 14 14 C 1.46897 * 111.00280 * 222.42142 * 13 12 11 15 15 C 1.52998 * 109.47330 * 175.70446 * 14 13 12 16 16 F 1.39899 * 109.46942 * 54.35779 * 15 14 13 17 17 F 1.39897 * 109.47570 * 174.35936 * 15 14 13 18 18 F 1.39903 * 109.46976 * 294.36244 * 15 14 13 19 19 H 0.97008 * 119.99294 * 0.02562 * 1 2 3 20 20 H 1.08993 * 113.73084 * 107.60794 * 11 9 7 21 21 H 1.08997 * 113.72873 * 336.32159 * 11 9 7 22 22 H 1.09000 * 113.76163 * 138.03636 * 12 11 9 23 23 H 1.08999 * 113.76127 * 269.40618 * 12 11 9 24 24 H 1.08999 * 109.47000 * 295.70313 * 14 13 12 25 25 H 1.09003 * 109.47355 * 55.70656 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 1 3.9364 -0.5781 0.7935 11 6 4.1322 -0.9380 -1.3841 12 6 5.1378 -2.0481 -1.0297 13 7 4.1075 -2.5454 -0.0913 14 6 4.7091 -2.9439 1.1882 15 6 3.6050 -3.3500 2.1664 16 9 2.8041 -4.3370 1.5820 17 9 4.1814 -3.8507 3.3386 18 9 2.8197 -2.2334 2.4729 19 1 -0.4849 0.8402 -0.0004 20 1 4.5852 0.0481 -1.4862 21 1 3.4728 -1.1920 -2.2140 22 1 5.3473 -2.7304 -1.8536 23 1 6.0398 -1.6832 -0.5383 24 1 5.3801 -3.7876 1.0270 25 1 5.2711 -2.1066 1.6020 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212744096.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:05 Heat of formation + Delta-G solvation = -139.954321 kcal Electronic energy + Delta-G solvation = -14644.716233 eV Core-core repulsion = 11629.548893 eV Total energy + Delta-G solvation = -3015.167340 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.87817 -48.44068 -48.32756 -40.57783 -34.62025 -32.61292 -29.34839 -27.14994 -24.51798 -23.49980 -20.56465 -19.39757 -19.31005 -18.99508 -18.22921 -16.78099 -16.46481 -15.46336 -15.30530 -15.13362 -14.94071 -14.79946 -14.54671 -14.50756 -14.36759 -13.81468 -13.36995 -12.95680 -12.46593 -12.26455 -12.14631 -11.70930 -11.51106 -11.20565 -10.66745 -9.63257 -8.21979 -6.24382 1.36108 1.39198 1.47133 1.92455 2.38300 2.82356 3.04026 3.10942 3.25178 3.58159 3.96903 4.17054 4.22604 4.34313 4.58752 4.69471 4.86224 5.08334 5.23698 5.38810 5.66847 6.16188 6.47557 6.78996 7.37885 8.95596 Molecular weight = 209.07amu Principal moments of inertia in cm(-1) A = 0.034870 B = 0.014310 C = 0.012016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.797688 B = 1956.252916 C = 2329.732348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.010 3.990 3 Si 0.939 3.061 4 H -0.259 1.259 5 H -0.292 1.292 6 H -0.241 1.241 7 C -0.482 4.482 8 H 0.025 0.975 9 C 0.129 3.871 10 H 0.047 0.953 11 C -0.157 4.157 12 C 0.022 3.978 13 N -0.496 5.496 14 C -0.018 4.018 15 C 0.448 3.552 16 F -0.192 7.192 17 F -0.189 7.189 18 F -0.187 7.187 19 H 0.264 0.736 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.142 0.858 25 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.163 -2.667 1.516 14.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.187 4.187 3 Si 0.762 3.238 4 H -0.184 1.184 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.520 4.520 8 H 0.044 0.956 9 C 0.021 3.979 10 H 0.064 0.936 11 C -0.195 4.195 12 C -0.106 4.106 13 N -0.220 5.220 14 C -0.147 4.147 15 C 0.394 3.606 16 F -0.173 7.173 17 F -0.170 7.170 18 F -0.169 7.169 19 H 0.073 0.927 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.123 0.877 23 H 0.114 0.886 24 H 0.160 0.840 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.597 -3.150 1.378 14.025 hybrid contribution -0.257 1.125 0.667 1.333 sum 13.340 -2.025 2.045 13.647 Atomic orbital electron populations 1.70077 1.08362 1.27806 1.53222 1.25760 0.95390 1.02982 0.94558 0.85850 0.79669 0.78698 0.79544 1.18402 1.21847 1.16465 1.20787 0.90178 0.92578 1.48475 0.95620 1.21551 0.94667 0.86869 0.94825 0.93557 1.23612 0.98076 0.98682 0.99143 1.23902 0.93770 0.96312 0.96573 1.68597 1.19986 1.26615 1.06780 1.23849 0.93282 1.05797 0.91817 1.20883 0.84226 0.74658 0.80869 1.93130 1.76516 1.63484 1.84218 1.93132 1.84270 1.88137 1.51504 1.93265 1.77192 1.52788 1.93649 0.92730 0.90962 0.90983 0.87725 0.88572 0.83991 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.57 13.96 21.45 0.30 -60.27 15 2 C 0.01 0.56 5.47 84.65 0.46 1.03 15 3 Si 0.94 42.97 26.78 68.60 1.84 44.80 15 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 15 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 15 6 H -0.24 -9.90 6.34 99.48 0.63 -9.27 15 7 C -0.48 -27.50 8.30 25.60 0.21 -27.29 15 8 H 0.03 1.71 8.06 -2.91 -0.02 1.68 15 9 C 0.13 5.70 1.21 44.27 0.05 5.75 15 10 H 0.05 2.02 6.34 -2.39 -0.02 2.00 15 11 C -0.16 -5.71 6.90 31.24 0.22 -5.49 15 12 C 0.02 0.61 7.98 86.40 0.69 1.30 15 13 N -0.50 -18.58 5.84 -888.04 -5.19 -23.77 15 14 C -0.02 -0.53 4.85 86.30 0.42 -0.11 15 15 C 0.45 16.73 3.27 71.98 0.24 16.97 15 16 F -0.19 -8.08 17.14 44.97 0.77 -7.31 15 17 F -0.19 -6.12 17.32 44.97 0.78 -5.35 15 18 F -0.19 -8.58 14.76 44.97 0.66 -7.92 15 19 H 0.26 15.68 8.31 -92.70 -0.77 14.91 15 20 H 0.07 2.33 7.86 -2.39 -0.02 2.31 15 21 H 0.07 2.89 8.09 -2.39 -0.02 2.87 15 22 H 0.10 2.52 8.14 -2.39 -0.02 2.50 15 23 H 0.10 2.04 7.88 -2.39 -0.02 2.02 15 24 H 0.14 3.21 8.14 -2.39 -0.02 3.19 15 25 H 0.10 2.50 7.68 -2.39 -0.02 2.48 15 Total: -1.00 -68.78 224.83 2.57 -66.21 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: 1.12 Total: 1.44 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 2.29 Total: -7.85 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -4.89 Total: -84.04 kcal Atomic # 9 Polarization: -22.79 SS G_CDS: 2.21 Total: -20.57 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.84 Total: 44.80 kcal Total: -68.78 2.57 -66.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212744096.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.742 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds