Wall clock time and date at job start Thu Apr 9 2020 14:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48493 * 109.47322 * 90.00076 * 3 2 1 5 5 H 1.48507 * 109.47291 * 210.00189 * 3 2 1 6 6 H 1.48501 * 109.47089 * 330.00123 * 3 2 1 7 7 C 1.39932 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99624 * 17.28365 * 7 2 1 9 9 C 1.41041 * 120.00267 * 197.28819 * 7 2 1 10 10 C 1.40728 * 120.30701 * 29.21740 * 9 7 2 11 11 C 1.36448 * 119.95337 * 180.02562 * 10 9 7 12 12 C 1.38903 * 120.59533 * 0.02562 * 11 10 9 13 13 C 1.38168 * 120.62665 * 359.97438 * 12 11 10 14 14 C 1.38748 * 120.02610 * 359.72127 * 13 12 11 15 15 N 1.38728 * 120.29693 * 180.27606 * 14 13 12 16 16 C 1.46501 * 119.99732 * 0.30255 * 15 14 13 17 17 C 1.53004 * 109.46854 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.46937 * 179.97438 * 17 16 15 19 19 H 0.96997 * 120.00366 * 175.41024 * 1 2 3 20 20 H 1.08004 * 120.02045 * 359.97438 * 10 9 7 21 21 H 1.07991 * 119.70116 * 180.02562 * 11 10 9 22 22 H 1.07998 * 119.68521 * 179.97438 * 12 11 10 23 23 H 1.07996 * 119.98747 * 180.02562 * 13 12 11 24 24 H 0.96999 * 120.00519 * 180.29822 * 15 14 13 25 25 H 1.08994 * 109.47234 * 299.99551 * 16 15 14 26 26 H 1.09004 * 109.47246 * 59.99874 * 16 15 14 27 27 H 1.08997 * 109.47337 * 299.99743 * 17 16 15 28 28 H 1.09000 * 109.47329 * 60.00392 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4904 2.0463 1.4000 5 1 3.5404 1.4400 -0.7001 6 1 1.4403 2.6526 -0.7000 7 6 2.0084 -1.2119 -0.0005 8 1 1.5048 -2.1260 -0.2789 9 6 3.3710 -1.2397 0.3624 10 6 3.8838 -0.2938 1.2694 11 6 5.2033 -0.3270 1.6152 12 6 6.0506 -1.2883 1.0790 13 6 5.5729 -2.2286 0.1865 14 6 4.2343 -2.2226 -0.1782 15 7 3.7474 -3.1676 -1.0696 16 6 4.6466 -4.1821 -1.6251 17 6 3.8638 -5.0936 -2.5724 18 9 4.7227 -6.0620 -3.1034 19 1 -0.4850 -0.8373 -0.0672 20 1 3.2335 0.4585 1.6909 21 1 5.5924 0.4006 2.3119 22 1 7.0926 -1.3009 1.3626 23 1 6.2408 -2.9717 -0.2237 24 1 2.8117 -3.1568 -1.3249 25 1 5.4515 -3.6929 -2.1736 26 1 5.0682 -4.7769 -0.8148 27 1 3.0591 -5.5828 -2.0236 28 1 3.4420 -4.4991 -3.3828 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212758941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:09 Heat of formation + Delta-G solvation = -56.951659 kcal Electronic energy + Delta-G solvation = -13257.106690 eV Core-core repulsion = 10799.768145 eV Total energy + Delta-G solvation = -2457.338545 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.71650 -40.01406 -36.61222 -35.51738 -32.22409 -31.49501 -28.56365 -26.35626 -24.48935 -22.43657 -21.77302 -19.97649 -18.18374 -17.34444 -17.32882 -16.60593 -16.05822 -15.76869 -15.40966 -14.96776 -14.66646 -14.50365 -14.08542 -13.82497 -13.28138 -12.64723 -12.28048 -12.15406 -12.08329 -11.87374 -11.53781 -11.24680 -10.82870 -10.70602 -9.55023 -9.15447 -8.25752 -6.27823 0.88604 1.06510 1.41390 1.58379 1.79453 2.24612 2.65959 2.75726 3.58683 3.60638 3.83188 4.01323 4.28155 4.40420 4.50803 4.70112 4.71388 4.85562 4.94209 5.17185 5.38571 5.54886 5.65479 5.79775 6.11284 6.14364 6.37011 6.60419 6.77179 7.04137 7.07803 8.15130 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.010486 C = 0.008241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.145925 B = 2669.658349 C = 3396.701680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.009 3.991 3 Si 1.106 2.894 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.228 4.228 11 C -0.137 4.137 12 C -0.179 4.179 13 C -0.177 4.177 14 C 0.118 3.882 15 N -0.747 5.747 16 C 0.104 3.896 17 C 0.061 3.939 18 F -0.219 7.219 19 H 0.274 0.726 20 H 0.099 0.901 21 H 0.120 0.880 22 H 0.128 0.872 23 H 0.121 0.879 24 H 0.396 0.604 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 -4.759 -2.840 9.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.202 4.202 3 Si 0.930 3.070 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.216 1.216 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.016 3.984 10 C -0.248 4.248 11 C -0.157 4.157 12 C -0.199 4.199 13 C -0.201 4.201 14 C 0.017 3.983 15 N -0.381 5.381 16 C -0.022 4.022 17 C 0.006 3.994 18 F -0.201 7.201 19 H 0.085 0.915 20 H 0.117 0.883 21 H 0.138 0.862 22 H 0.146 0.854 23 H 0.139 0.861 24 H 0.231 0.769 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.743 -3.326 -2.867 8.901 hybrid contribution -0.714 -1.919 -0.102 2.050 sum 7.028 -5.245 -2.969 9.259 Atomic orbital electron populations 1.70644 1.08482 1.32091 1.37619 1.28001 0.95754 1.06449 0.90045 0.83135 0.74456 0.71046 0.78382 1.19086 1.19114 1.21574 1.20189 0.95801 0.95799 1.45633 0.92925 1.17629 0.93062 0.93785 0.93969 1.20817 0.96939 1.03840 1.03253 1.20551 0.93374 1.00073 1.01696 1.20694 0.99433 0.97858 1.01897 1.20543 0.93209 1.02641 1.03697 1.18088 0.92703 0.93468 0.94077 1.43852 1.11521 1.32508 1.50254 1.21686 0.93646 0.90062 0.96774 1.22018 0.91285 0.88299 0.97806 1.92746 1.73570 1.65638 1.88115 0.91548 0.88335 0.86193 0.85425 0.86150 0.76937 0.91923 0.91996 0.89137 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.11 13.66 21.83 0.30 -47.81 15 2 C 0.01 0.47 5.42 85.25 0.46 0.93 15 3 Si 1.11 50.32 24.90 68.60 1.71 52.03 15 4 H -0.26 -11.29 6.44 99.48 0.64 -10.65 15 5 H -0.27 -12.03 7.02 99.48 0.70 -11.33 15 6 H -0.29 -12.67 7.11 99.48 0.71 -11.96 15 7 C -0.54 -29.20 8.82 23.37 0.21 -29.00 15 8 H 0.05 2.90 6.98 -2.91 -0.02 2.88 15 9 C 0.02 1.03 5.14 -21.17 -0.11 0.92 15 10 C -0.23 -10.87 7.21 22.46 0.16 -10.71 15 11 C -0.14 -5.66 9.97 22.01 0.22 -5.44 15 12 C -0.18 -6.86 10.04 22.41 0.22 -6.64 15 13 C -0.18 -7.03 9.30 22.38 0.21 -6.82 15 14 C 0.12 5.22 6.68 38.99 0.26 5.48 15 15 N -0.75 -28.12 5.63 -338.04 -1.90 -30.02 15 16 C 0.10 2.98 5.36 86.38 0.46 3.44 15 17 C 0.06 1.43 7.67 71.98 0.55 1.98 15 18 F -0.22 -5.61 17.36 44.97 0.78 -4.83 15 19 H 0.27 15.07 8.73 -92.71 -0.81 14.27 15 20 H 0.10 4.73 4.42 -2.91 -0.01 4.71 15 21 H 0.12 4.19 8.06 -2.92 -0.02 4.17 15 22 H 0.13 3.98 8.06 -2.91 -0.02 3.96 15 23 H 0.12 4.07 6.73 -2.91 -0.02 4.05 15 24 H 0.40 15.21 6.76 -92.71 -0.63 14.59 15 25 H 0.06 1.77 7.93 -2.39 -0.02 1.76 15 26 H 0.06 1.75 7.96 -2.38 -0.02 1.73 15 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -58.46 239.62 3.97 -54.50 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.43 Total: 22.00 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 2.65 Total: -45.86 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -1.61 Total: -77.84 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.78 Total: -4.83 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 1.71 Total: 52.03 kcal Total: -58.46 3.97 -54.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212758941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.455 kcal (2) G-P(sol) polarization free energy of solvation -58.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds