Wall clock time and date at job start Thu Apr 9 2020 14:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47364 * 2 1 4 4 C 1.36837 * 125.87562 * 269.95776 * 3 2 1 5 5 C 1.47063 * 126.88858 * 0.05432 * 4 3 2 6 6 O 1.21563 * 119.99664 * 359.97438 * 5 4 3 7 7 O 1.34800 * 120.00415 * 180.02562 * 5 4 3 8 8 C 1.46910 * 106.22951 * 180.02562 * 4 3 2 9 9 C 1.34381 * 106.55283 * 359.75353 * 8 4 3 10 10 N 1.35773 * 125.87793 * 89.99971 * 3 2 1 11 11 C 1.37383 * 124.96726 * 359.93978 * 10 3 2 12 12 H 1.07995 * 120.00505 * 336.89291 * 11 10 3 13 13 C 1.39011 * 119.99804 * 156.89519 * 11 10 3 14 14 N 1.31286 * 120.00012 * 336.43501 * 13 11 10 15 15 Si 1.86798 * 119.99956 * 156.43698 * 13 11 10 16 16 H 1.48505 * 109.47287 * 179.97438 * 15 13 11 17 17 H 1.48506 * 109.47106 * 299.99544 * 15 13 11 18 18 H 1.48497 * 109.47421 * 59.99958 * 15 13 11 19 19 H 1.08996 * 109.47286 * 300.00533 * 1 2 3 20 20 H 1.09001 * 109.46710 * 59.99991 * 1 2 3 21 21 H 1.08995 * 109.47611 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47119 * 239.99624 * 2 1 3 23 23 H 1.09006 * 109.47177 * 120.00078 * 2 1 3 24 24 H 0.96690 * 117.00514 * 180.02562 * 7 5 4 25 25 H 1.07992 * 126.72033 * 180.02562 * 8 4 3 26 26 H 1.08002 * 125.54074 * 180.22874 * 9 8 4 27 27 H 0.97001 * 119.99823 * 354.24447 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3004 2.1765 -1.1088 5 6 2.1551 1.7657 -2.5134 6 8 1.7595 0.6481 -2.7819 7 8 2.4615 2.6281 -3.5031 8 6 2.7619 3.4809 -0.6149 9 6 2.7319 3.4146 0.7270 10 7 2.2976 2.1710 1.1001 11 6 2.1462 1.7464 2.3979 12 1 1.4694 0.9362 2.6256 13 6 2.8642 2.3596 3.4181 14 7 3.9844 2.9881 3.1463 15 14 2.2352 2.2896 5.1756 16 1 3.1761 3.0141 6.0673 17 1 0.8952 2.9257 5.2475 18 1 2.1346 0.8729 5.6092 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.3496 2.3130 -4.4103 25 1 3.0619 4.3285 -1.2130 26 1 3.0084 4.2116 1.4013 27 1 4.3545 2.9541 2.2503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212856850.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:11 Heat of formation + Delta-G solvation = -67.774264 kcal Electronic energy + Delta-G solvation = -13696.839022 eV Core-core repulsion = 11226.658384 eV Total energy + Delta-G solvation = -2470.180638 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.28202 -38.77182 -35.25791 -33.81562 -32.65696 -30.21561 -27.39304 -25.16820 -23.17213 -21.83913 -19.96451 -19.08640 -17.49591 -16.85588 -15.79812 -14.78207 -14.67675 -14.04497 -13.74459 -13.45454 -13.26471 -12.60175 -12.36619 -11.74693 -11.40370 -11.29531 -11.02101 -10.83182 -10.64778 -10.45607 -10.40076 -10.05739 -9.60087 -9.24235 -7.99235 -7.35664 -6.97267 -4.57513 2.44443 3.03367 3.10656 3.30004 3.61194 3.81100 4.03394 4.28166 4.63401 4.87368 5.71399 5.88620 6.09002 6.12221 6.34299 6.41364 6.49975 6.65163 6.73424 6.86616 6.97337 7.17654 7.31856 7.40159 7.67653 7.94766 8.15570 8.79327 8.86123 9.14301 10.06037 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.044890 B = 0.010336 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.603406 B = 2708.409379 C = 3197.764560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 C 0.054 3.946 4 C -0.273 4.273 5 C 0.556 3.444 6 O -0.554 6.554 7 O -0.523 6.523 8 C -0.175 4.175 9 C -0.056 4.056 10 N -0.236 5.236 11 C -0.439 4.439 12 H 0.107 0.893 13 C 0.028 3.972 14 N -0.834 5.834 15 Si 1.082 2.918 16 H -0.273 1.273 17 H -0.276 1.276 18 H -0.276 1.276 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.395 0.605 25 H 0.129 0.871 26 H 0.154 0.846 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -1.019 -2.893 4.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 C -0.072 4.072 4 C -0.281 4.281 5 C 0.407 3.593 6 O -0.448 6.448 7 O -0.332 6.332 8 C -0.197 4.197 9 C -0.186 4.186 10 N 0.106 4.894 11 C -0.566 4.566 12 H 0.124 0.876 13 C -0.187 4.187 14 N -0.462 5.462 15 Si 0.905 3.095 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.202 1.202 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.104 0.896 23 H 0.082 0.918 24 H 0.251 0.749 25 H 0.147 0.853 26 H 0.171 0.829 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.762 -0.645 -0.654 2.911 hybrid contribution -0.243 -0.581 -2.227 2.315 sum -3.006 -1.226 -2.881 4.340 Atomic orbital electron populations 1.21604 0.95665 1.00469 1.01547 1.19965 0.95365 0.90697 1.02523 1.20046 1.08019 0.93874 0.85222 1.18518 1.24128 0.98032 0.87385 1.20123 0.72499 0.81331 0.85383 1.90752 1.47225 1.22050 1.84755 1.84660 1.82094 1.47810 1.18685 1.21604 1.08309 0.96647 0.93179 1.21600 1.12479 0.89440 0.95090 1.40137 1.36783 1.07569 1.04901 1.20871 1.30006 1.24391 0.81311 0.87569 1.26839 0.92864 0.92745 1.06206 1.70634 1.14188 1.35110 1.26238 0.83329 0.76389 0.77590 0.72178 1.19721 1.20153 1.20179 0.93158 0.92916 0.93256 0.89623 0.91789 0.74913 0.85302 0.82871 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.89 37.16 0.37 -2.18 15 2 C -0.05 -1.01 5.47 -27.89 -0.15 -1.17 15 3 C 0.05 1.31 6.14 -81.36 -0.50 0.81 15 4 C -0.27 -6.47 6.29 -103.32 -0.65 -7.12 15 5 C 0.56 11.96 8.32 34.31 0.29 12.25 15 6 O -0.55 -12.46 15.60 -19.32 -0.30 -12.76 15 7 O -0.52 -9.16 13.33 -40.76 -0.54 -9.70 15 8 C -0.17 -4.04 10.99 -37.43 -0.41 -4.45 15 9 C -0.06 -1.38 9.01 -16.65 -0.15 -1.53 15 10 N -0.24 -6.04 2.75 -57.66 -0.16 -6.20 15 11 C -0.44 -11.16 9.33 -14.78 -0.14 -11.30 15 12 H 0.11 2.60 7.56 -52.49 -0.40 2.20 15 13 C 0.03 0.70 5.15 -17.50 -0.09 0.61 15 14 N -0.83 -21.88 12.55 55.50 0.70 -21.18 15 15 Si 1.08 21.10 29.98 -169.99 -5.10 16.00 15 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 17 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 18 H -0.28 -5.09 7.11 56.52 0.40 -4.68 15 19 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 20 H 0.05 1.03 8.14 -51.93 -0.42 0.60 15 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.09 1.83 6.47 -51.93 -0.34 1.50 15 23 H 0.06 1.34 7.60 -51.93 -0.39 0.94 15 24 H 0.40 4.69 9.11 45.56 0.42 5.11 15 25 H 0.13 2.65 8.06 -52.49 -0.42 2.23 15 26 H 0.15 3.75 6.94 -52.49 -0.36 3.38 15 27 H 0.29 7.88 6.57 -40.82 -0.27 7.61 15 LS Contribution 242.86 15.07 3.66 3.66 Total: -1.00 -29.18 242.86 -5.01 -34.20 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -1.83 Total: 10.07 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.44 Total: -14.09 kcal Atomic # 7 Polarization: -27.92 SS G_CDS: 0.54 Total: -27.38 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.84 Total: -22.46 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.10 Total: 16.00 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.18 -5.01 -34.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212856850.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.579 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds