Wall clock time and date at job start Thu Apr 9 2020 14:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 109.47364 * 2 1 4 4 C 1.36837 * 125.87562 * 269.95776 * 3 2 1 5 5 C 1.47063 * 126.88858 * 0.05432 * 4 3 2 6 6 O 1.21563 * 119.99664 * 359.97438 * 5 4 3 7 7 O 1.34800 * 120.00415 * 180.02562 * 5 4 3 8 8 C 1.46910 * 106.22951 * 180.02562 * 4 3 2 9 9 C 1.34381 * 106.55283 * 359.75353 * 8 4 3 10 10 N 1.35773 * 125.87793 * 89.99971 * 3 2 1 11 11 C 1.37383 * 124.96726 * 359.93978 * 10 3 2 12 12 H 1.07995 * 120.00505 * 336.89291 * 11 10 3 13 13 C 1.39011 * 119.99804 * 156.89519 * 11 10 3 14 14 N 1.31286 * 120.00012 * 336.43501 * 13 11 10 15 15 Si 1.86798 * 119.99956 * 156.43698 * 13 11 10 16 16 H 1.48505 * 109.47287 * 179.97438 * 15 13 11 17 17 H 1.48506 * 109.47106 * 299.99544 * 15 13 11 18 18 H 1.48497 * 109.47421 * 59.99958 * 15 13 11 19 19 H 1.08996 * 109.47286 * 300.00533 * 1 2 3 20 20 H 1.09001 * 109.46710 * 59.99991 * 1 2 3 21 21 H 1.08995 * 109.47611 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47119 * 239.99624 * 2 1 3 23 23 H 1.09006 * 109.47177 * 120.00078 * 2 1 3 24 24 H 0.96690 * 117.00514 * 180.02562 * 7 5 4 25 25 H 1.07992 * 126.72033 * 180.02562 * 8 4 3 26 26 H 1.08002 * 125.54074 * 180.22874 * 9 8 4 27 27 H 0.97001 * 119.99823 * 354.24447 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3004 2.1765 -1.1088 5 6 2.1551 1.7657 -2.5134 6 8 1.7595 0.6481 -2.7819 7 8 2.4615 2.6281 -3.5031 8 6 2.7619 3.4809 -0.6149 9 6 2.7319 3.4146 0.7270 10 7 2.2976 2.1710 1.1001 11 6 2.1462 1.7464 2.3979 12 1 1.4694 0.9362 2.6256 13 6 2.8642 2.3596 3.4181 14 7 3.9844 2.9881 3.1463 15 14 2.2352 2.2896 5.1756 16 1 3.1761 3.0141 6.0673 17 1 0.8952 2.9257 5.2475 18 1 2.1346 0.8729 5.6092 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.3496 2.3130 -4.4103 25 1 3.0619 4.3285 -1.2130 26 1 3.0084 4.2116 1.4013 27 1 4.3545 2.9541 2.2503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212856850.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:11 Heat of formation + Delta-G solvation = -85.337856 kcal Electronic energy + Delta-G solvation = -13697.600636 eV Core-core repulsion = 11226.658384 eV Total energy + Delta-G solvation = -2470.942252 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.10988 -40.42561 -36.83753 -35.67458 -34.34204 -32.08580 -29.16077 -27.02330 -24.89044 -23.53425 -21.81328 -20.83004 -19.30546 -18.52037 -17.58336 -16.47596 -16.40532 -15.69498 -15.46080 -15.18504 -14.97531 -14.30694 -14.04931 -13.49900 -13.14675 -12.95824 -12.64000 -12.39933 -12.28103 -12.14517 -11.94566 -11.77378 -11.30359 -11.03544 -9.88488 -9.27691 -8.85632 -6.53949 0.69361 1.40850 1.52659 1.79785 1.86445 2.19356 2.45998 2.50499 2.80590 3.05987 4.02459 4.24339 4.31217 4.49243 4.64567 4.73837 4.87821 4.98012 5.02291 5.16325 5.27241 5.43158 5.52992 5.69731 5.79599 6.13379 6.26202 6.94330 7.21637 7.32573 8.10060 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.044890 B = 0.010336 C = 0.008754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.603406 B = 2708.409379 C = 3197.764560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 C 0.039 3.961 4 C -0.291 4.291 5 C 0.564 3.436 6 O -0.565 6.565 7 O -0.511 6.511 8 C -0.170 4.170 9 C -0.075 4.075 10 N -0.255 5.255 11 C -0.461 4.461 12 H 0.111 0.889 13 C -0.007 4.007 14 N -0.858 5.858 15 Si 1.133 2.867 16 H -0.275 1.275 17 H -0.264 1.264 18 H -0.256 1.256 19 H 0.043 0.957 20 H 0.044 0.956 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.423 0.577 25 H 0.153 0.847 26 H 0.147 0.853 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -1.442 -3.157 5.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C -0.086 4.086 4 C -0.299 4.299 5 C 0.413 3.587 6 O -0.460 6.460 7 O -0.324 6.324 8 C -0.193 4.193 9 C -0.204 4.204 10 N 0.086 4.914 11 C -0.587 4.587 12 H 0.128 0.872 13 C -0.215 4.215 14 N -0.485 5.485 15 Si 0.949 3.051 16 H -0.200 1.200 17 H -0.189 1.189 18 H -0.181 1.181 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.099 0.901 22 H 0.103 0.897 23 H 0.081 0.919 24 H 0.283 0.717 25 H 0.171 0.829 26 H 0.164 0.836 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.564 -1.074 -0.971 3.847 hybrid contribution 0.022 -0.439 -2.328 2.370 sum -3.542 -1.513 -3.299 5.071 Atomic orbital electron populations 1.21528 0.93694 1.02338 1.00768 1.20028 0.97010 0.89040 1.02308 1.20682 1.07508 0.95126 0.85300 1.18936 1.23915 0.98153 0.88852 1.19748 0.72210 0.81320 0.85372 1.90747 1.47659 1.22584 1.85050 1.84573 1.81159 1.46685 1.19985 1.21905 1.07355 0.97294 0.92774 1.21696 1.13406 0.89558 0.95768 1.40339 1.37711 1.08030 1.05299 1.21182 1.30516 1.25199 0.81829 0.87172 1.28348 0.92083 0.91421 1.09685 1.70746 1.15519 1.37025 1.25258 0.82735 0.76150 0.78727 0.67492 1.20018 1.18858 1.18052 0.93786 0.93722 0.90080 0.89734 0.91907 0.71678 0.82909 0.83567 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.89 71.98 0.71 -3.83 15 2 C -0.05 -1.92 5.47 29.85 0.16 -1.76 15 3 C 0.04 1.88 6.14 41.62 0.26 2.14 15 4 C -0.29 -13.55 6.29 -19.02 -0.12 -13.66 15 5 C 0.56 23.17 8.32 70.14 0.58 23.75 15 6 O -0.57 -24.35 15.60 19.63 0.31 -24.04 15 7 O -0.51 -16.41 13.33 -57.11 -0.76 -17.17 15 8 C -0.17 -7.80 10.99 23.66 0.26 -7.54 15 9 C -0.07 -3.72 9.01 83.02 0.75 -2.98 15 10 N -0.26 -13.18 2.75 -336.33 -0.93 -14.11 15 11 C -0.46 -23.57 9.33 84.01 0.78 -22.79 15 12 H 0.11 5.38 7.56 -2.91 -0.02 5.35 15 13 C -0.01 -0.32 5.15 84.96 0.44 0.11 15 14 N -0.86 -45.69 12.55 21.67 0.27 -45.42 15 15 Si 1.13 41.74 29.98 68.60 2.06 43.80 15 16 H -0.28 -10.19 7.11 99.48 0.71 -9.49 15 17 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 18 H -0.26 -8.57 7.11 99.48 0.71 -7.86 15 19 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 21 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.08 3.53 6.47 -2.38 -0.02 3.52 15 23 H 0.06 2.60 7.60 -2.38 -0.02 2.58 15 24 H 0.42 8.53 9.11 -74.06 -0.67 7.85 15 25 H 0.15 6.06 8.06 -2.91 -0.02 6.04 15 26 H 0.15 7.36 6.94 -2.91 -0.02 7.34 15 27 H 0.28 15.38 6.57 -92.71 -0.61 14.77 15 Total: -1.00 -61.67 242.86 5.45 -56.22 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.68 Total: 27.29 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 3.82 Total: -26.56 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.65 Total: -59.53 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.45 Total: -41.21 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.06 Total: 43.80 kcal Total: -61.67 5.45 -56.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212856850.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.122 kcal (2) G-P(sol) polarization free energy of solvation -61.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds