Wall clock time and date at job start Thu Apr 9 2020 14:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34802 * 117.00065 * 2 1 4 4 O 1.21556 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.47059 * 119.99620 * 179.97438 * 3 2 1 6 6 C 1.46896 * 126.88981 * 359.97438 * 5 3 2 7 7 C 1.34378 * 106.56048 * 179.79006 * 6 5 3 8 8 N 1.36911 * 108.90214 * 0.37289 * 7 6 5 9 9 C 1.37391 * 124.96892 * 179.88196 * 8 7 6 10 10 H 1.07992 * 120.00032 * 201.53354 * 9 8 7 11 11 C 1.39018 * 119.99691 * 21.53196 * 9 8 7 12 12 N 1.31286 * 119.99520 * 199.75503 * 11 9 8 13 13 Si 1.86797 * 120.00160 * 19.75280 * 11 9 8 14 14 H 1.48493 * 109.47295 * 264.16880 * 13 11 9 15 15 H 1.48501 * 109.47170 * 24.17013 * 13 11 9 16 16 H 1.48501 * 109.46711 * 144.16918 * 13 11 9 17 17 C 1.35776 * 110.06365 * 359.61026 * 8 7 6 18 18 C 1.50700 * 125.87881 * 180.20996 * 17 8 7 19 19 H 1.09003 * 109.47552 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46948 * 300.00047 * 1 2 3 21 21 H 1.09005 * 109.46972 * 59.99708 * 1 2 3 22 22 H 1.08002 * 126.72136 * 0.05535 * 6 5 3 23 23 H 1.07997 * 125.54790 * 180.20840 * 7 6 5 24 24 H 0.96996 * 120.00149 * 353.63955 * 12 11 9 25 25 H 1.08997 * 109.46873 * 89.99595 * 18 17 8 26 26 H 1.08996 * 109.47455 * 210.00545 * 18 17 8 27 27 H 1.09002 * 109.46934 * 330.00507 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2205 0.0005 5 6 3.5326 1.2779 0.0006 6 6 4.4746 0.1508 0.0017 7 6 5.7085 0.6828 -0.0028 8 7 5.6030 2.0478 0.0017 9 6 6.6648 2.9197 0.0014 10 1 6.5310 3.9337 0.3482 11 6 7.9113 2.4967 -0.4455 12 7 8.9914 3.1589 -0.1013 13 14 8.0496 0.9860 -1.5354 14 1 8.3599 -0.2012 -0.6991 15 1 6.7636 0.7687 -2.2457 16 1 9.1351 1.1896 -2.5281 17 6 4.2955 2.4139 0.0007 18 6 3.7742 3.8279 0.0002 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 4.2244 -0.8999 0.0014 23 1 6.6330 0.1245 -0.0066 24 1 8.9137 3.9937 0.3865 25 1 3.6495 4.1688 -1.0276 26 1 2.8132 3.8611 0.5133 27 1 4.4833 4.4767 0.5145 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218062450.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:26 Heat of formation + Delta-G solvation = -66.824078 kcal Electronic energy + Delta-G solvation = -13555.329270 eV Core-core repulsion = 11085.189836 eV Total energy + Delta-G solvation = -2470.139435 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.14182 -40.72866 -37.19785 -35.59226 -32.64139 -32.43728 -28.96639 -27.13796 -26.48915 -23.30731 -22.25280 -20.47141 -19.43121 -18.33108 -17.76778 -17.15198 -16.65544 -16.04871 -15.63964 -15.07398 -14.45266 -14.10795 -14.03221 -13.80787 -13.61113 -13.45785 -12.87813 -12.67735 -12.31884 -12.05002 -11.72568 -11.63773 -11.27579 -11.09386 -9.95386 -9.36717 -8.96087 -6.62548 0.64156 1.26022 1.43423 1.59952 1.71953 1.96338 2.11054 2.47128 2.67948 2.89234 4.04497 4.21223 4.39512 4.41949 4.43798 4.46777 4.70088 4.72701 4.78209 4.98991 5.08798 5.25278 5.37437 5.54889 5.64290 6.08678 6.25463 6.78206 7.02008 7.19320 8.02743 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.052488 B = 0.009739 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.327040 B = 2874.438776 C = 3284.009184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.546 3.454 4 O -0.558 6.558 5 C -0.283 4.283 6 C -0.152 4.152 7 C -0.096 4.096 8 N -0.262 5.262 9 C -0.443 4.443 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.855 5.855 13 Si 1.089 2.911 14 H -0.246 1.246 15 H -0.262 1.262 16 H -0.278 1.278 17 C 0.036 3.964 18 C -0.067 4.067 19 H 0.134 0.866 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.168 0.832 23 H 0.164 0.836 24 H 0.277 0.723 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 -6.758 -1.193 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.279 6.279 3 C 0.397 3.603 4 O -0.453 6.453 5 C -0.291 4.291 6 C -0.174 4.174 7 C -0.225 4.225 8 N 0.079 4.921 9 C -0.570 4.570 10 H 0.106 0.894 11 C -0.205 4.205 12 N -0.483 5.483 13 Si 0.910 3.090 14 H -0.171 1.171 15 H -0.187 1.187 16 H -0.205 1.205 17 C -0.089 4.089 18 C -0.124 4.124 19 H 0.152 0.848 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.186 0.814 23 H 0.181 0.819 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.996 -7.236 -1.875 10.946 hybrid contribution -0.919 1.727 1.014 2.203 sum -8.915 -5.509 -0.861 10.515 Atomic orbital electron populations 1.23500 0.75037 1.05471 1.02239 1.86561 1.24653 1.32017 1.84664 1.20123 0.87706 0.81052 0.71423 1.90698 1.67251 1.36671 1.50630 1.18968 0.88914 0.93880 1.27353 1.21991 0.89918 0.98334 1.07183 1.21867 1.00064 0.83226 1.17298 1.40401 1.04430 1.05437 1.41867 1.21004 0.89466 0.97101 1.49459 0.89369 1.27737 0.89546 1.06932 0.96304 1.70828 1.29435 1.15293 1.32775 0.83433 0.77304 0.72261 0.76014 1.17126 1.18708 1.20454 1.20672 0.83318 0.96435 1.08476 1.20216 1.00689 0.89129 1.02407 0.84837 0.92265 0.92255 0.81422 0.81932 0.91189 0.91158 0.89650 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.57 113.37 1.20 1.92 15 2 O -0.36 -12.25 10.46 -57.14 -0.60 -12.85 15 3 C 0.55 22.31 7.95 70.14 0.56 22.87 15 4 O -0.56 -24.01 14.60 19.65 0.29 -23.72 15 5 C -0.28 -12.61 6.29 -19.02 -0.12 -12.73 15 6 C -0.15 -6.26 10.99 23.66 0.26 -6.00 15 7 C -0.10 -4.34 8.34 83.02 0.69 -3.64 15 8 N -0.26 -13.05 2.70 -336.32 -0.91 -13.96 15 9 C -0.44 -23.49 9.93 84.01 0.83 -22.66 15 10 H 0.09 4.88 7.18 -2.91 -0.02 4.86 15 11 C 0.00 0.22 5.44 84.96 0.46 0.68 15 12 N -0.86 -45.89 13.68 21.67 0.30 -45.59 15 13 Si 1.09 45.55 25.05 68.60 1.72 47.26 15 14 H -0.25 -9.15 6.74 99.48 0.67 -8.48 15 15 H -0.26 -10.94 6.65 99.48 0.66 -10.28 15 16 H -0.28 -11.32 7.11 99.48 0.71 -10.61 15 17 C 0.04 1.71 6.88 41.62 0.29 1.99 15 18 C -0.07 -2.82 9.51 71.24 0.68 -2.14 15 19 H 0.13 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.06 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.06 1.37 8.14 -2.38 -0.02 1.36 15 22 H 0.17 5.65 8.06 -2.91 -0.02 5.62 15 23 H 0.16 6.74 4.51 -2.91 -0.01 6.72 15 24 H 0.28 14.73 8.73 -92.71 -0.81 13.92 15 25 H 0.07 2.79 8.14 -2.39 -0.02 2.77 15 26 H 0.08 3.46 6.47 -2.39 -0.02 3.45 15 27 H 0.06 2.31 7.17 -2.39 -0.02 2.30 15 Total: -1.00 -60.29 237.57 6.71 -53.58 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.06 Total: 14.99 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.85 Total: -19.71 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.61 Total: -59.56 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.31 Total: -36.57 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.72 Total: 47.26 kcal Total: -60.29 6.71 -53.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218062450.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.243 kcal (2) G-P(sol) polarization free energy of solvation -60.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds