Wall clock time and date at job start Thu Apr 9 2020 14:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35671 * 116.99499 * 2 1 4 4 C 1.38928 * 119.67956 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.10996 * 179.97438 * 4 3 2 6 6 C 1.38830 * 118.48696 * 359.97438 * 5 4 3 7 7 C 1.38052 * 119.28669 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.57974 * 180.28014 * 7 6 5 9 9 H 1.09001 * 109.47366 * 244.72070 * 8 7 6 10 10 O 1.42899 * 109.47363 * 4.72641 * 8 7 6 11 11 C 1.50705 * 109.47295 * 124.72333 * 8 7 6 12 12 H 1.08003 * 119.99316 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00382 * 180.02562 * 11 8 7 14 14 N 1.31511 * 119.99792 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99867 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47484 * 89.99992 * 15 13 11 17 17 H 1.48503 * 109.46952 * 209.99960 * 15 13 11 18 18 H 1.48496 * 109.47458 * 329.99585 * 15 13 11 19 19 N 1.31964 * 120.83627 * 359.97438 * 7 6 5 20 20 H 1.08994 * 109.47412 * 300.00127 * 1 2 3 21 21 H 1.09001 * 109.46852 * 60.01080 * 1 2 3 22 22 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 23 23 H 1.07995 * 120.44492 * 359.95163 * 4 3 2 24 24 H 1.08000 * 120.75725 * 180.02562 * 5 4 3 25 25 H 1.07998 * 120.35753 * 179.97438 * 6 5 4 26 26 H 0.96704 * 113.99958 * 59.99542 * 10 8 7 27 27 H 0.96998 * 119.99951 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2504 3.6492 -0.0016 7 6 1.8770 3.5096 -0.0021 8 6 1.0044 4.7383 -0.0091 9 1 0.4354 4.7852 0.9194 10 8 1.8234 5.9036 -0.1253 11 6 0.0547 4.6734 -1.1774 12 1 0.0802 3.8268 -1.8476 13 6 -0.8467 5.6947 -1.3908 14 7 -0.8773 6.7258 -0.5750 15 14 -2.0242 5.6138 -2.8386 16 1 -3.2753 4.9309 -2.4216 17 1 -2.3408 6.9905 -3.2967 18 1 -1.3929 4.8558 -3.9485 19 7 1.3185 2.3140 -0.0026 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 4.0229 0.3696 -0.0002 24 1 5.1254 2.5947 -0.0019 25 1 3.6992 4.6315 -0.0016 26 1 2.3589 5.9293 -0.9301 27 1 -1.5111 7.4445 -0.7253 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234876588.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:34 Heat of formation + Delta-G solvation = -52.302021 kcal Electronic energy + Delta-G solvation = -13523.254447 eV Core-core repulsion = 11053.744736 eV Total energy + Delta-G solvation = -2469.509711 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.05364 -37.64248 -35.45051 -32.29664 -31.91025 -30.10535 -27.38775 -26.46960 -23.65352 -22.28796 -20.98349 -17.75388 -16.92980 -16.37201 -15.53839 -15.43286 -14.68362 -14.58845 -13.95966 -13.36848 -13.18418 -12.65815 -12.41437 -11.77898 -11.47813 -11.18964 -10.94392 -10.93927 -10.62680 -10.15303 -9.63492 -9.33112 -8.91605 -8.63935 -8.31942 -7.80444 -6.04598 -4.20811 1.77319 1.86086 3.27760 3.34318 3.37975 3.53236 4.32198 4.47175 4.86134 5.25685 5.33488 5.54191 5.57825 5.70434 5.71039 5.84064 6.03835 6.20774 6.31319 6.56652 6.74704 6.97748 7.51072 7.72958 7.82061 8.06353 8.58052 8.82786 9.22739 9.52265 10.99908 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.031969 B = 0.010942 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.645599 B = 2558.226325 C = 3202.299568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.318 6.318 3 C 0.310 3.690 4 C -0.220 4.220 5 C -0.048 4.048 6 C -0.218 4.218 7 C 0.176 3.824 8 C 0.268 3.732 9 H 0.081 0.919 10 O -0.556 6.556 11 C -0.548 4.548 12 H 0.060 0.940 13 C 0.077 3.923 14 N -0.862 5.862 15 Si 0.895 3.105 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 N -0.519 5.519 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.129 0.871 24 H 0.132 0.868 25 H 0.139 0.861 26 H 0.349 0.651 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -8.495 0.338 10.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.226 6.226 3 C 0.131 3.869 4 C -0.241 4.241 5 C -0.073 4.073 6 C -0.238 4.238 7 C 0.039 3.961 8 C 0.210 3.790 9 H 0.099 0.901 10 O -0.358 6.358 11 C -0.587 4.587 12 H 0.078 0.922 13 C -0.129 4.129 14 N -0.498 5.498 15 Si 0.722 3.278 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 N -0.243 5.243 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.106 0.894 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.157 0.843 26 H 0.194 0.806 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.726 -8.506 0.970 9.779 hybrid contribution 0.191 -0.113 -1.321 1.339 sum 4.917 -8.619 -0.351 9.929 Atomic orbital electron populations 1.22782 0.77590 1.01924 1.03088 1.86151 1.22741 1.25265 1.88406 1.19927 0.89229 0.85092 0.92661 1.20826 0.92017 0.99013 1.12197 1.21281 0.99809 0.91548 0.94667 1.21868 0.94832 0.99806 1.07315 1.22806 0.92658 0.93604 0.87056 1.18389 0.85595 0.76074 0.98929 0.90129 1.86623 1.60360 1.44418 1.44410 1.21391 1.18829 1.06347 1.12097 0.92214 1.25037 0.96526 0.95050 0.96249 1.70064 1.35117 1.08337 1.36254 0.86572 0.81281 0.77269 0.82673 1.20457 1.21085 1.19876 1.67201 1.40379 0.98177 1.18579 0.92297 0.92053 0.89421 0.85297 0.85056 0.84300 0.80586 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 101.05 1.05 1.69 15 2 O -0.32 -5.61 10.48 -18.71 -0.20 -5.81 15 3 C 0.31 6.03 7.49 -17.12 -0.13 5.90 15 4 C -0.22 -3.66 10.04 -39.27 -0.39 -4.05 15 5 C -0.05 -0.75 10.17 -39.31 -0.40 -1.15 15 6 C -0.22 -4.07 9.23 -39.43 -0.36 -4.43 15 7 C 0.18 3.92 6.11 -82.60 -0.51 3.42 15 8 C 0.27 6.87 3.32 -29.03 -0.10 6.78 15 9 H 0.08 2.27 8.14 -51.93 -0.42 1.85 15 10 O -0.56 -13.74 11.61 -35.23 -0.41 -14.15 15 11 C -0.55 -15.15 8.56 -34.44 -0.29 -15.44 15 12 H 0.06 1.68 7.68 -52.48 -0.40 1.28 15 13 C 0.08 2.15 5.40 -17.82 -0.10 2.05 15 14 N -0.86 -25.08 12.84 55.43 0.71 -24.37 15 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 19 N -0.52 -11.49 8.82 -9.55 -0.08 -11.58 15 20 H 0.06 0.93 8.10 -51.93 -0.42 0.51 15 21 H 0.06 1.01 8.10 -51.93 -0.42 0.59 15 22 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 23 H 0.13 1.78 8.06 -52.49 -0.42 1.35 15 24 H 0.13 1.56 8.06 -52.49 -0.42 1.14 15 25 H 0.14 2.37 6.71 -52.49 -0.35 2.02 15 26 H 0.35 7.54 8.28 45.56 0.38 7.92 15 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 244.89 15.07 3.69 3.69 Total: -1.00 -31.02 244.89 -4.58 -35.60 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -2.05 Total: 5.59 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.23 Total: -5.24 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.63 Total: -35.95 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.60 Total: -19.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.02 -4.58 -35.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234876588.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.697 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds