Wall clock time and date at job start Thu Apr 9 2020 14:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35671 * 116.99499 * 2 1 4 4 C 1.38928 * 119.67956 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.10996 * 179.97438 * 4 3 2 6 6 C 1.38830 * 118.48696 * 359.97438 * 5 4 3 7 7 C 1.38052 * 119.28669 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.57974 * 180.28014 * 7 6 5 9 9 H 1.09001 * 109.47366 * 244.72070 * 8 7 6 10 10 O 1.42899 * 109.47363 * 4.72641 * 8 7 6 11 11 C 1.50705 * 109.47295 * 124.72333 * 8 7 6 12 12 H 1.08003 * 119.99316 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00382 * 180.02562 * 11 8 7 14 14 N 1.31511 * 119.99792 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99867 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47484 * 89.99992 * 15 13 11 17 17 H 1.48503 * 109.46952 * 209.99960 * 15 13 11 18 18 H 1.48496 * 109.47458 * 329.99585 * 15 13 11 19 19 N 1.31964 * 120.83627 * 359.97438 * 7 6 5 20 20 H 1.08994 * 109.47412 * 300.00127 * 1 2 3 21 21 H 1.09001 * 109.46852 * 60.01080 * 1 2 3 22 22 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 23 23 H 1.07995 * 120.44492 * 359.95163 * 4 3 2 24 24 H 1.08000 * 120.75725 * 180.02562 * 5 4 3 25 25 H 1.07998 * 120.35753 * 179.97438 * 6 5 4 26 26 H 0.96704 * 113.99958 * 59.99542 * 10 8 7 27 27 H 0.96998 * 119.99951 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2504 3.6492 -0.0016 7 6 1.8770 3.5096 -0.0021 8 6 1.0044 4.7383 -0.0091 9 1 0.4354 4.7852 0.9194 10 8 1.8234 5.9036 -0.1253 11 6 0.0547 4.6734 -1.1774 12 1 0.0802 3.8268 -1.8476 13 6 -0.8467 5.6947 -1.3908 14 7 -0.8773 6.7258 -0.5750 15 14 -2.0242 5.6138 -2.8386 16 1 -3.2753 4.9309 -2.4216 17 1 -2.3408 6.9905 -3.2967 18 1 -1.3929 4.8558 -3.9485 19 7 1.3185 2.3140 -0.0026 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 4.0229 0.3696 -0.0002 24 1 5.1254 2.5947 -0.0019 25 1 3.6992 4.6315 -0.0016 26 1 2.3589 5.9293 -0.9301 27 1 -1.5111 7.4445 -0.7253 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234876588.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:34 Heat of formation + Delta-G solvation = -77.057420 kcal Electronic energy + Delta-G solvation = -13524.327922 eV Core-core repulsion = 11053.744736 eV Total energy + Delta-G solvation = -2470.583186 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.51175 -39.11124 -37.28972 -34.35907 -33.43809 -31.63007 -29.15788 -27.97000 -25.47750 -23.69526 -22.67800 -19.37622 -18.82133 -17.89084 -16.94288 -16.84921 -16.66057 -16.37110 -15.47873 -15.13439 -14.75136 -14.12572 -14.05372 -13.46045 -13.11138 -12.84238 -12.79644 -12.57109 -12.13921 -11.99704 -11.55933 -10.91361 -10.73945 -10.60481 -10.08613 -9.30916 -8.16488 -6.40424 0.29771 0.47933 1.38613 1.39024 1.50197 2.22213 2.37155 2.92194 3.06466 3.39057 4.07014 4.16207 4.28711 4.34295 4.42475 4.45076 4.55788 4.78621 4.84364 5.15609 5.32209 5.43944 5.63894 5.64649 6.00066 6.30926 6.65750 7.07849 7.28187 7.45899 8.87878 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.031969 B = 0.010942 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.645599 B = 2558.226325 C = 3202.299568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.318 6.318 3 C 0.288 3.712 4 C -0.205 4.205 5 C -0.031 4.031 6 C -0.217 4.217 7 C 0.140 3.860 8 C 0.273 3.727 9 H 0.038 0.962 10 O -0.564 6.564 11 C -0.559 4.559 12 H 0.048 0.952 13 C 0.028 3.972 14 N -0.897 5.897 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.553 5.553 20 H 0.045 0.955 21 H 0.042 0.958 22 H 0.131 0.869 23 H 0.167 0.833 24 H 0.184 0.816 25 H 0.151 0.849 26 H 0.363 0.637 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 -9.910 -0.470 12.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.226 6.226 3 C 0.108 3.892 4 C -0.225 4.225 5 C -0.056 4.056 6 C -0.237 4.237 7 C 0.005 3.995 8 C 0.215 3.785 9 H 0.055 0.945 10 O -0.368 6.368 11 C -0.597 4.597 12 H 0.066 0.934 13 C -0.174 4.174 14 N -0.535 5.535 15 Si 0.786 3.214 16 H -0.200 1.200 17 H -0.202 1.202 18 H -0.194 1.194 19 N -0.278 5.278 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.149 0.851 23 H 0.184 0.816 24 H 0.201 0.799 25 H 0.169 0.831 26 H 0.209 0.791 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.281 -9.926 0.158 11.747 hybrid contribution -0.219 0.237 -1.027 1.076 sum 6.062 -9.689 -0.869 11.462 Atomic orbital electron populations 1.22921 0.76712 1.04226 1.01503 1.86158 1.23613 1.24413 1.88372 1.20373 0.90604 0.84742 0.93442 1.21354 0.90951 1.00920 1.09291 1.21811 1.01990 0.89844 0.91979 1.22021 0.93381 1.01746 1.06508 1.22257 0.93845 0.92503 0.90935 1.17932 0.86191 0.78102 0.96299 0.94472 1.86542 1.60451 1.44513 1.45267 1.21594 1.19682 1.05891 1.12532 0.93355 1.25840 0.98090 0.94624 0.98891 1.70179 1.36156 1.09100 1.38030 0.85535 0.78999 0.77565 0.79322 1.19985 1.20186 1.19446 1.66971 1.42176 0.98953 1.19684 0.93587 0.93960 0.85124 0.81582 0.79890 0.83100 0.79112 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.38 113.37 1.18 2.42 15 2 O -0.32 -10.76 10.48 -89.88 -0.94 -11.70 15 3 C 0.29 10.81 7.49 84.80 0.63 11.45 15 4 C -0.20 -6.06 10.04 22.47 0.23 -5.84 15 5 C -0.03 -0.86 10.17 22.45 0.23 -0.63 15 6 C -0.22 -7.71 9.23 22.37 0.21 -7.51 15 7 C 0.14 6.37 6.11 42.49 0.26 6.63 15 8 C 0.27 14.57 3.32 29.10 0.10 14.67 15 9 H 0.04 2.26 8.14 -2.39 -0.02 2.24 15 10 O -0.56 -28.56 11.61 -148.98 -1.73 -30.29 15 11 C -0.56 -31.83 8.56 25.60 0.22 -31.61 15 12 H 0.05 2.80 7.68 -2.91 -0.02 2.78 15 13 C 0.03 1.59 5.40 84.65 0.46 2.05 15 14 N -0.90 -53.54 12.84 21.45 0.28 -53.27 15 15 Si 0.96 44.29 29.54 68.60 2.03 46.32 15 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 19 N -0.55 -24.82 8.82 -296.99 -2.62 -27.44 15 20 H 0.05 1.48 8.10 -2.39 -0.02 1.46 15 21 H 0.04 1.41 8.10 -2.39 -0.02 1.39 15 22 H 0.13 2.72 8.14 -2.39 -0.02 2.70 15 23 H 0.17 3.67 8.06 -2.91 -0.02 3.65 15 24 H 0.18 3.16 8.06 -2.91 -0.02 3.14 15 25 H 0.15 4.89 6.71 -2.91 -0.02 4.87 15 26 H 0.36 15.83 8.28 -74.05 -0.61 15.21 15 27 H 0.26 14.82 8.31 -92.71 -0.77 14.05 15 Total: -1.00 -69.01 244.89 1.09 -67.92 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.57 Total: 16.83 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 3.50 Total: -8.38 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.34 Total: -80.70 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -2.67 Total: -41.99 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.01 1.09 -67.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234876588.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.135 kcal (2) G-P(sol) polarization free energy of solvation -69.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds