Wall clock time and date at job start Thu Apr 9 2020 14:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38628 * 120.05576 * 74.72592 * 12 9 7 14 14 O 1.35900 * 120.02775 * 359.97264 * 13 12 9 15 15 C 1.38775 * 119.94486 * 179.72169 * 13 12 9 16 16 C 1.38182 * 120.05189 * 0.54797 * 15 13 12 17 17 C 1.38172 * 120.11030 * 359.72642 * 16 15 13 18 18 C 1.38636 * 120.05319 * 254.99481 * 12 9 7 19 19 O 1.35903 * 120.02731 * 0.03211 * 18 12 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 22 22 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 23 23 H 0.96702 * 113.99679 * 90.00262 * 14 13 12 24 24 H 1.08000 * 119.97734 * 180.27720 * 15 13 12 25 25 H 1.07997 * 119.94337 * 179.74658 * 16 15 13 26 26 H 1.08003 * 119.97626 * 179.97438 * 17 16 15 27 27 H 0.96700 * 114.00493 * 89.99527 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 6 2.9215 -3.9721 1.1458 14 8 2.7173 -3.2600 2.2851 15 6 3.8185 -5.0310 1.1401 16 6 4.0312 -5.7516 -0.0197 17 6 3.3475 -5.4235 -1.1748 18 6 2.4453 -4.3691 -1.1726 19 8 1.7736 -4.0465 -2.3092 20 1 -0.4850 0.8401 -0.0004 21 1 0.9642 -2.5347 2.0330 22 1 -0.3010 -1.8627 1.1883 23 1 2.0102 -3.6085 2.8452 24 1 4.3540 -5.2895 2.0416 25 1 4.7326 -6.5727 -0.0232 26 1 3.5157 -5.9878 -2.0801 27 1 2.2281 -3.3979 -2.8641 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238613290.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:45 Heat of formation + Delta-G solvation = -59.141419 kcal Electronic energy + Delta-G solvation = -13853.491612 eV Core-core repulsion = 11383.685322 eV Total energy + Delta-G solvation = -2469.806290 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.58702 -37.14939 -35.17487 -34.35939 -31.39439 -29.03187 -28.69037 -25.80615 -22.93608 -21.87800 -20.24910 -18.15684 -16.75312 -16.54618 -15.78259 -15.32324 -14.62545 -14.19278 -13.88862 -13.64279 -12.82774 -12.53178 -11.91419 -11.66780 -11.42439 -11.17064 -10.99585 -10.84058 -10.35990 -9.96522 -9.88698 -9.32021 -8.56594 -8.01894 -7.92542 -7.15279 -6.04763 -4.19311 1.73804 1.92815 3.23374 3.31854 3.37469 4.08981 4.37554 4.66835 5.09963 5.18647 5.39396 5.62708 5.66428 6.01665 6.30721 6.50532 6.75501 6.79914 6.99255 7.01175 7.22178 7.74843 7.79518 8.13775 8.25880 8.36311 8.71457 8.97627 9.16303 9.50482 10.93426 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.036247 B = 0.011438 C = 0.010599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.286115 B = 2447.488716 C = 2641.165482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.246 3.754 10 H 0.056 0.944 11 N -0.856 5.856 12 C -0.076 4.076 13 C 0.126 3.874 14 O -0.483 6.483 15 C -0.162 4.162 16 C -0.117 4.117 17 C -0.160 4.160 18 C 0.111 3.889 19 O -0.494 6.494 20 H 0.264 0.736 21 H 0.314 0.686 22 H 0.355 0.645 23 H 0.383 0.617 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.365 -7.537 0.469 9.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.136 3.864 10 H 0.074 0.926 11 N -0.392 5.392 12 C -0.078 4.078 13 C 0.081 3.919 14 O -0.293 6.293 15 C -0.181 4.181 16 C -0.136 4.136 17 C -0.179 4.179 18 C 0.066 3.934 19 O -0.303 6.303 20 H 0.074 0.926 21 H 0.129 0.871 22 H 0.171 0.829 23 H 0.240 0.760 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.043 -8.185 0.208 9.616 hybrid contribution 0.857 2.029 0.172 2.210 sum 5.900 -6.156 0.380 8.535 Atomic orbital electron populations 1.69764 1.05794 1.26933 1.50995 1.24995 0.94922 0.99192 0.94638 0.86465 0.80130 0.83367 0.77587 1.19851 1.20958 1.20960 1.21781 0.93440 0.90878 1.50931 0.92860 1.17843 0.88907 0.87396 0.92267 0.92624 1.59688 1.18672 1.56042 1.04768 1.21250 0.97348 0.96820 0.92369 1.18102 0.95870 0.91094 0.86858 1.84854 1.58150 1.54337 1.31958 1.21349 1.01446 0.96332 0.98979 1.20595 1.00427 1.00127 0.92428 1.21285 0.97854 0.99749 0.98993 1.18168 0.93488 0.94925 0.86842 1.84733 1.48528 1.64417 1.32662 0.92631 0.87139 0.82859 0.76026 0.86230 0.86268 0.86195 0.75668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 11.55 55.43 0.64 -24.44 15 2 C 0.06 1.76 5.38 -17.82 -0.10 1.67 15 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 15 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.53 -14.59 8.52 -34.44 -0.29 -14.89 15 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.25 6.29 2.74 -70.02 -0.19 6.10 15 10 H 0.06 1.58 7.14 -51.93 -0.37 1.21 15 11 N -0.86 -20.78 9.07 -6.65 -0.06 -20.84 15 12 C -0.08 -1.71 4.91 -104.33 -0.51 -2.22 15 13 C 0.13 2.55 6.47 -39.24 -0.25 2.29 15 14 O -0.48 -9.49 11.13 -19.43 -0.22 -9.71 15 15 C -0.16 -2.76 9.98 -39.40 -0.39 -3.15 15 16 C -0.12 -1.83 10.04 -39.63 -0.40 -2.23 15 17 C -0.16 -2.70 9.98 -39.41 -0.39 -3.09 15 18 C 0.11 2.23 6.68 -39.24 -0.26 1.97 15 19 O -0.49 -9.56 12.34 -19.43 -0.24 -9.80 15 20 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.31 7.08 5.23 -39.29 -0.21 6.87 15 22 H 0.36 9.28 7.09 -39.29 -0.28 9.00 15 23 H 0.38 6.02 7.80 45.56 0.36 6.37 15 24 H 0.12 1.72 8.06 -52.49 -0.42 1.30 15 25 H 0.12 1.45 8.06 -52.49 -0.42 1.02 15 26 H 0.12 1.70 8.06 -52.48 -0.42 1.28 15 27 H 0.39 6.00 9.06 45.56 0.41 6.41 15 LS Contribution 236.21 15.07 3.56 3.56 Total: -1.00 -30.87 236.21 -5.03 -35.90 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.90 Total: 22.49 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -2.79 Total: -13.55 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.58 Total: -45.28 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.46 Total: -19.51 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.87 -5.03 -35.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238613290.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.243 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds