Wall clock time and date at job start Thu Apr 9 2020 14:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47241 * 270.00380 * 3 2 1 5 5 H 1.48504 * 109.46724 * 30.00565 * 3 2 1 6 6 H 1.48497 * 109.47236 * 150.00311 * 3 2 1 7 7 C 1.37879 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99307 * 179.97438 * 7 2 1 9 9 C 1.50688 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.53012 * 109.47231 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46518 * 305.00152 * 10 9 7 12 12 N 1.46896 * 109.46748 * 64.99750 * 10 9 7 13 13 C 1.50697 * 109.47266 * 185.00086 * 10 9 7 14 14 C 1.38244 * 119.97201 * 99.99803 * 13 10 9 15 15 C 1.38205 * 120.02298 * 179.97438 * 14 13 10 16 16 C 1.38459 * 119.97412 * 0.24026 * 15 14 13 17 17 F 1.35099 * 120.02759 * 179.72396 * 16 15 14 18 18 C 1.38466 * 119.94836 * 359.48301 * 16 15 14 19 19 C 1.38196 * 119.97140 * 0.53984 * 18 16 15 20 20 H 0.96995 * 119.99942 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47425 * 60.00529 * 9 7 2 22 22 H 1.08994 * 109.47534 * 299.99998 * 9 7 2 23 23 H 1.00902 * 111.00098 * 60.00364 * 12 10 9 24 24 H 1.00904 * 111.00003 * 183.95333 * 12 10 9 25 25 H 1.07999 * 119.98898 * 359.97438 * 14 13 10 26 26 H 1.08002 * 120.00949 * 179.97438 * 15 14 13 27 27 H 1.07997 * 120.00962 * 180.25357 * 18 16 15 28 28 H 1.08000 * 119.98525 * 179.74601 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5551 -0.8424 12 7 3.0084 -3.6539 1.2547 13 6 1.4959 -4.9637 -0.1244 14 6 1.4105 -5.5975 -1.3500 15 6 0.7239 -6.7914 -1.4647 16 6 0.1174 -7.3502 -0.3525 17 9 -0.5588 -8.5145 -0.4645 18 6 0.2085 -6.7173 0.8757 19 6 0.8952 -5.5233 0.9878 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.3961 -3.7517 2.0507 24 1 3.7161 -4.3731 1.2523 25 1 1.8804 -5.1595 -2.2182 26 1 0.6570 -7.2862 -2.4223 27 1 -0.2608 -7.1544 1.7447 28 1 0.9629 -5.0274 1.9449 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259242852.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:40 Heat of formation + Delta-G solvation = -32.785781 kcal Electronic energy + Delta-G solvation = -13047.862369 eV Core-core repulsion = 10591.571735 eV Total energy + Delta-G solvation = -2456.290634 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.74517 -39.12703 -35.22141 -32.44000 -30.98712 -29.42938 -28.21521 -24.35094 -22.83752 -22.04165 -19.75683 -17.56796 -16.51711 -16.08650 -15.44427 -15.21227 -15.01124 -14.36029 -14.11370 -13.34429 -13.31452 -12.77222 -12.33224 -12.10323 -11.72139 -11.13876 -10.94159 -10.72332 -10.56502 -10.23774 -9.62980 -9.11462 -8.92848 -8.32511 -8.22752 -7.96527 -5.93011 -3.92185 1.36904 1.41585 3.37241 3.43474 3.48640 3.80415 4.42487 4.53185 4.89451 5.01061 5.22914 5.28547 5.44899 5.50678 5.60870 5.97036 6.21075 6.24859 6.27800 6.44333 6.67841 6.85319 7.10351 7.50887 7.66985 7.94280 8.06860 8.13403 8.50081 9.14082 9.70095 11.18714 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.060182 B = 0.006722 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.143232 B = 4164.221713 C = 4270.100539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.893 3.107 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.495 4.495 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.131 3.869 11 H 0.080 0.920 12 N -0.821 5.821 13 C -0.105 4.105 14 C -0.088 4.088 15 C -0.152 4.152 16 C 0.077 3.923 17 F -0.148 7.148 18 C -0.151 4.151 19 C -0.093 4.093 20 H 0.258 0.742 21 H 0.020 0.980 22 H 0.017 0.983 23 H 0.334 0.666 24 H 0.323 0.677 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -12.561 0.009 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.149 4.149 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.081 0.919 9 C -0.001 4.001 10 C 0.019 3.981 11 H 0.098 0.902 12 N -0.348 5.348 13 C -0.108 4.108 14 C -0.107 4.107 15 C -0.171 4.171 16 C 0.057 3.943 17 F -0.127 7.127 18 C -0.170 4.170 19 C -0.111 4.111 20 H 0.068 0.932 21 H 0.039 0.961 22 H 0.035 0.965 23 H 0.147 0.853 24 H 0.134 0.866 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.098 -11.717 -0.188 11.904 hybrid contribution -0.279 -0.287 0.092 0.410 sum 1.819 -12.003 -0.096 12.141 Atomic orbital electron populations 1.69970 1.06036 1.26421 1.51850 1.25026 0.94803 0.99215 0.95860 0.86581 0.79903 0.83530 0.77886 1.20930 1.21508 1.19833 1.21150 0.93394 0.90017 1.48827 0.91904 1.19151 0.92854 0.90700 0.97396 1.20851 0.94808 0.89986 0.92456 0.90198 1.58851 1.17812 1.54190 1.03924 1.21531 0.97928 0.98309 0.92994 1.20990 0.98164 0.93698 0.97865 1.21108 1.00471 0.97771 0.97783 1.17668 0.97492 0.83950 0.95152 1.91454 1.78202 1.46144 1.96894 1.21066 1.02446 0.97137 0.96346 1.20857 0.96604 0.94296 0.99340 0.93208 0.96139 0.96479 0.85253 0.86647 0.85013 0.85230 0.85247 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.34 15 2 C 0.05 1.45 5.46 -17.82 -0.10 1.35 15 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.50 -13.73 8.84 -34.45 -0.30 -14.04 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 15 9 C 0.04 0.90 4.60 -27.88 -0.13 0.77 15 10 C 0.13 2.52 2.93 -68.86 -0.20 2.31 15 11 H 0.08 1.55 8.00 -51.93 -0.42 1.14 15 12 N -0.82 -14.44 8.77 -5.65 -0.05 -14.49 15 13 C -0.11 -1.75 4.95 -104.62 -0.52 -2.27 15 14 C -0.09 -1.34 9.67 -39.59 -0.38 -1.72 15 15 C -0.15 -2.15 10.03 -39.51 -0.40 -2.55 15 16 C 0.08 1.13 7.30 -39.42 -0.29 0.84 15 17 F -0.15 -2.16 17.27 2.25 0.04 -2.12 15 18 C -0.15 -2.15 10.03 -39.51 -0.40 -2.55 15 19 C -0.09 -1.42 9.29 -39.59 -0.37 -1.78 15 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 21 H 0.02 0.55 8.14 -51.93 -0.42 0.12 15 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.33 5.57 7.34 -39.29 -0.29 5.28 15 24 H 0.32 4.74 9.06 -39.29 -0.36 4.38 15 25 H 0.13 1.80 8.04 -52.49 -0.42 1.38 15 26 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 15 28 H 0.13 1.83 6.66 -52.49 -0.35 1.48 15 LS Contribution 250.82 15.07 3.78 3.78 Total: -1.00 -30.19 250.82 -6.66 -36.85 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.06 Total: 5.12 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.08 Total: -19.64 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.69 Total: -40.83 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.19 -6.66 -36.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259242852.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.064 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds