Wall clock time and date at job start Thu Apr 9 2020 14:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86799 * 119.99731 * 2 1 4 4 H 1.48506 * 109.46712 * 240.00248 * 3 2 1 5 5 H 1.48499 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47241 * 120.00312 * 3 2 1 7 7 C 1.38874 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99699 * 199.46731 * 7 2 1 9 9 N 1.37557 * 120.00433 * 19.47446 * 7 2 1 10 10 C 1.37004 * 126.63908 * 31.03427 * 9 7 2 11 11 O 1.35440 * 125.77781 * 359.71877 * 10 9 7 12 12 N 1.31318 * 108.44306 * 179.68671 * 10 9 7 13 13 C 1.33702 * 109.26245 * 359.97438 * 12 10 9 14 14 C 1.35091 * 108.38936 * 0.07459 * 13 12 10 15 15 C 1.50637 * 123.79724 * 179.75600 * 14 13 12 16 16 N 1.47320 * 108.28903 * 343.82422 * 15 14 13 17 17 C 1.46967 * 111.37345 * 50.99653 * 16 15 14 18 18 C 1.50984 * 128.63802 * 180.19866 * 13 12 10 19 19 H 0.97000 * 120.00159 * 359.97438 * 1 2 3 20 20 H 0.96706 * 113.99982 * 89.99984 * 11 10 9 21 21 H 1.08998 * 109.70010 * 224.12498 * 15 14 13 22 22 H 1.09004 * 109.72926 * 103.54290 * 15 14 13 23 23 H 1.00893 * 110.99667 * 175.22451 * 16 15 14 24 24 H 1.08998 * 109.43551 * 168.65621 * 17 16 15 25 25 H 1.08997 * 109.43470 * 48.76950 * 17 16 15 26 26 H 1.08997 * 109.77926 * 283.58580 * 18 13 12 27 27 H 1.09008 * 109.77241 * 44.38874 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1014 1.6964 -1.2126 5 1 1.2827 2.7465 -0.0006 6 1 3.1015 1.6965 1.2124 7 6 2.0082 -1.2027 0.0005 8 1 3.0419 -1.2293 0.3123 9 7 1.3795 -2.3601 -0.3961 10 6 0.3770 -2.4695 -1.3235 11 8 -0.1782 -1.4450 -2.0139 12 7 0.0460 -3.7358 -1.4301 13 6 0.8027 -4.4609 -0.5999 14 6 1.6385 -3.6253 0.0544 15 6 2.6425 -4.0792 1.0817 16 7 2.2834 -5.4429 1.5079 17 6 2.0883 -6.3310 0.3533 18 6 0.7909 -5.9538 -0.3748 19 1 -0.4850 0.8400 0.0004 20 1 0.2624 -1.2516 -2.8527 21 1 2.6191 -3.4078 1.9400 22 1 3.6409 -4.0818 0.6443 23 1 2.9747 -5.8179 2.1399 24 1 2.0246 -7.3636 0.6967 25 1 2.9311 -6.2279 -0.3301 26 1 -0.0685 -6.2278 0.2371 27 1 0.7421 -6.4708 -1.3332 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259554307.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:55 Heat of formation + Delta-G solvation = 25.807161 kcal Electronic energy + Delta-G solvation = -13995.143500 eV Core-core repulsion = 11561.313608 eV Total energy + Delta-G solvation = -2433.829892 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64100 -36.70396 -35.19078 -33.90847 -31.57956 -29.53641 -28.07306 -25.23352 -22.76148 -21.86780 -20.39299 -18.12966 -17.99848 -16.35042 -15.61720 -14.86634 -14.76177 -14.31442 -13.75477 -13.35247 -12.71472 -12.53566 -12.21079 -11.97427 -11.33964 -11.28621 -11.10771 -10.96080 -10.54711 -10.46204 -10.01045 -9.33849 -8.52545 -8.27413 -7.97296 -6.72306 -6.57229 -4.46463 2.94123 3.04686 3.07404 3.47184 3.84672 4.20787 4.43381 4.75306 4.91215 5.31541 5.53654 5.79287 5.99002 6.03396 6.12350 6.33608 6.45455 6.50925 6.72155 7.10467 7.18843 7.31535 7.53411 7.81310 7.98307 8.20647 8.62553 8.82759 9.56451 9.67283 10.31994 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.044629 B = 0.011738 C = 0.009742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.237336 B = 2384.937567 C = 2873.499174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.061 3.939 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.379 4.379 8 H 0.104 0.896 9 N -0.245 5.245 10 C 0.326 3.674 11 O -0.415 6.415 12 N -0.516 5.516 13 C -0.017 4.017 14 C -0.085 4.085 15 C 0.159 3.841 16 N -0.685 5.685 17 C 0.065 3.935 18 C -0.016 4.016 19 H 0.281 0.719 20 H 0.359 0.641 21 H 0.077 0.923 22 H 0.028 0.972 23 H 0.338 0.662 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -4.501 0.327 7.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.156 4.156 3 Si 0.754 3.246 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.507 4.507 8 H 0.122 0.878 9 N 0.079 4.921 10 C 0.031 3.969 11 O -0.210 6.210 12 N -0.247 5.247 13 C -0.153 4.153 14 C -0.208 4.208 15 C 0.030 3.970 16 N -0.316 5.316 17 C -0.065 4.065 18 C -0.055 4.055 19 H 0.091 0.909 20 H 0.210 0.790 21 H 0.095 0.905 22 H 0.045 0.955 23 H 0.156 0.844 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.030 -4.179 0.305 5.814 hybrid contribution 2.089 1.322 -0.103 2.474 sum 6.119 -2.857 0.202 6.756 Atomic orbital electron populations 1.69952 1.06448 1.29208 1.35831 1.25528 0.95250 1.00426 0.94398 0.85981 0.79317 0.79844 0.79504 1.19208 1.20269 1.19290 1.19624 0.96949 0.83569 1.50547 0.87822 1.41462 1.22481 1.04848 1.23311 1.19888 0.95303 0.85596 0.96098 1.85056 1.53065 1.48311 1.34557 1.69757 1.28127 1.00445 1.26329 1.19629 0.98929 0.94791 1.01942 1.20100 1.07885 0.86021 1.06776 1.19858 0.92819 0.88926 0.95425 1.60179 1.51655 1.02387 1.17388 1.21918 0.97336 0.95435 0.91795 1.19766 0.96796 0.90260 0.98634 0.90850 0.79022 0.90458 0.95459 0.84427 0.91122 0.95244 0.91459 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.78 11.01 55.49 0.61 -21.17 15 2 C 0.06 1.55 4.93 -17.51 -0.09 1.47 15 3 Si 0.93 19.09 29.59 -169.99 -5.03 14.06 15 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.38 -10.09 9.83 -14.75 -0.14 -10.24 15 8 H 0.10 2.59 7.90 -52.49 -0.41 2.17 15 9 N -0.25 -6.77 2.87 -59.01 -0.17 -6.93 15 10 C 0.33 9.14 8.37 -87.87 -0.74 8.41 15 11 O -0.42 -10.87 11.06 -18.01 -0.20 -11.07 15 12 N -0.52 -14.19 11.27 -10.51 -0.12 -14.31 15 13 C -0.02 -0.42 7.07 -82.76 -0.58 -1.00 15 14 C -0.09 -2.14 6.78 -81.54 -0.55 -2.69 15 15 C 0.16 3.21 6.74 -4.78 -0.03 3.17 15 16 N -0.68 -11.63 6.82 -114.44 -0.78 -12.41 15 17 C 0.07 1.03 6.51 -3.54 -0.02 1.01 15 18 C -0.02 -0.30 6.52 -27.49 -0.18 -0.48 15 19 H 0.28 7.20 8.31 -40.82 -0.34 6.86 15 20 H 0.36 7.55 9.06 45.56 0.41 7.96 15 21 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.34 4.47 8.90 -39.30 -0.35 4.12 15 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.03 0.46 8.07 -51.93 -0.42 0.04 15 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.06 1.14 8.14 -51.92 -0.42 0.71 15 LS Contribution 233.63 15.07 3.52 3.52 Total: -1.00 -32.88 233.63 -6.52 -39.41 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -2.02 Total: 9.26 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.34 Total: -0.35 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.46 Total: -54.83 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.20 Total: -11.07 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.88 -6.52 -39.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259554307.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.214 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds