Wall clock time and date at job start Thu Apr 9 2020 14:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47033 * 264.97518 * 7 6 5 9 9 O 1.20767 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00185 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.47528 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99627 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00323 * 179.97438 * 11 10 8 14 14 N 1.31509 * 119.99844 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00023 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47395 * 90.00687 * 15 13 11 17 17 H 1.48505 * 109.47311 * 210.00731 * 15 13 11 18 18 H 1.48504 * 109.47353 * 330.00261 * 15 13 11 19 19 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 20 20 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 21 21 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 22 22 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 23 23 H 1.09001 * 109.47578 * 24.97025 * 7 6 5 24 24 H 1.09002 * 109.47003 * 144.97536 * 7 6 5 25 25 H 1.08993 * 109.47441 * 300.00065 * 10 8 7 26 26 H 1.09005 * 109.46852 * 59.99775 * 10 8 7 27 27 H 0.96999 * 120.00014 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 6 1.7121 -3.0438 -1.4027 9 8 1.8436 -2.2688 -2.3195 10 6 1.3009 -4.4681 -1.6731 11 6 1.1181 -4.6654 -3.1559 12 1 1.2836 -3.8417 -3.8346 13 6 0.7407 -5.8975 -3.6462 14 7 0.5397 -6.9006 -2.8197 15 14 0.5149 -6.1421 -5.4842 16 1 1.8013 -6.5731 -6.0880 17 1 -0.5169 -7.1834 -5.7220 18 1 0.0805 -4.8644 -6.1040 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8897 0.5142 21 1 -0.3633 0.8902 0.5133 22 1 4.5339 -1.1535 0.0156 23 1 2.7614 -3.1796 0.4505 24 1 1.0497 -2.7144 0.5991 25 1 2.0737 -5.1448 -1.3088 26 1 0.3623 -4.6789 -1.1605 27 1 0.2738 -7.7673 -3.1646 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259640265.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:58 Heat of formation + Delta-G solvation = 9.207002 kcal Electronic energy + Delta-G solvation = -13196.932454 eV Core-core repulsion = 10730.089974 eV Total energy + Delta-G solvation = -2466.842480 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.70453 -38.51096 -34.92816 -32.99213 -32.33725 -29.79428 -28.59201 -27.82058 -23.77291 -21.53187 -21.11840 -18.72621 -17.35073 -17.19664 -16.34824 -15.12893 -14.86802 -14.40781 -14.20938 -13.53509 -13.17463 -13.04759 -12.44551 -12.30191 -12.02956 -11.80379 -11.18154 -10.88394 -10.80807 -10.65698 -10.05823 -9.69347 -9.36599 -9.34011 -8.48425 -8.35853 -6.10659 -4.11598 1.70269 2.42203 2.97225 3.30633 3.36503 3.43067 3.45527 4.34736 4.41571 4.72559 5.06428 5.09388 5.24872 5.27516 5.57105 5.62687 5.75628 5.82043 5.98706 5.99963 6.28482 6.64880 7.16886 7.28359 7.88547 8.16884 8.45945 8.63651 8.98061 9.54019 11.01219 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.056268 B = 0.006861 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.496116 B = 4079.805760 C = 4106.785576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.028 3.972 3 N -0.374 5.374 4 O 0.092 5.908 5 C -0.061 4.061 6 C -0.176 4.176 7 C -0.105 4.105 8 C 0.355 3.645 9 O -0.457 6.457 10 C -0.025 4.025 11 C -0.518 4.518 12 H 0.071 0.929 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.214 0.786 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 8.104 8.257 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.131 4.131 3 N -0.081 5.081 4 O 0.028 5.972 5 C -0.142 4.142 6 C -0.180 4.180 7 C -0.143 4.143 8 C 0.231 3.769 9 O -0.330 6.330 10 C -0.061 4.061 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 H 0.101 0.899 20 H 0.099 0.901 21 H 0.091 0.909 22 H 0.230 0.770 23 H 0.123 0.877 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.601 9.663 7.762 12.665 hybrid contribution -0.110 -1.304 -0.860 1.566 sum 2.492 8.359 6.902 11.123 Atomic orbital electron populations 1.20162 0.86204 1.03256 1.03736 1.23446 0.98935 0.88484 1.02229 1.73755 0.89520 1.24294 1.20513 1.84748 1.21525 1.23074 1.67866 1.25684 1.00675 0.83500 1.04344 1.21019 0.92378 0.97228 1.07356 1.20718 1.03997 0.89134 1.00445 1.25186 0.71796 0.92269 0.87696 1.90265 1.38895 1.56541 1.47346 1.19597 0.98760 0.88412 0.99365 1.21177 1.46164 0.96709 0.91515 0.91044 1.24992 0.95236 0.95873 0.98285 1.69948 1.47488 1.01880 1.34514 0.86482 0.77893 0.77927 0.85119 1.20580 1.21194 1.19712 0.89904 0.90066 0.90860 0.76967 0.87697 0.87749 0.92922 0.92905 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.39 36.01 0.37 -0.64 15 2 C 0.03 0.45 7.33 -82.10 -0.60 -0.15 15 3 N -0.37 -6.27 12.07 33.42 0.40 -5.87 15 4 O 0.09 1.40 11.20 17.17 0.19 1.59 15 5 C -0.06 -0.83 12.26 29.74 0.36 -0.46 15 6 C -0.18 -2.72 4.82 -104.42 -0.50 -3.23 15 7 C -0.10 -1.57 6.13 -29.03 -0.18 -1.75 15 8 C 0.36 7.33 7.14 -29.04 -0.21 7.12 15 9 O -0.46 -11.00 15.14 5.99 0.09 -10.91 15 10 C -0.02 -0.59 5.40 -29.04 -0.16 -0.75 15 11 C -0.52 -14.55 8.92 -34.44 -0.31 -14.86 15 12 H 0.07 2.09 6.76 -52.49 -0.35 1.74 15 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 14 N -0.90 -25.84 13.29 55.43 0.74 -25.10 15 15 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 19 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 20 H 0.08 0.94 7.80 -51.93 -0.41 0.54 15 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.21 2.00 8.06 -52.48 -0.42 1.58 15 23 H 0.10 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.10 1.35 7.80 -51.93 -0.41 0.95 15 25 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.05 1.28 8.14 -51.93 -0.42 0.85 15 27 H 0.26 7.13 8.31 -40.82 -0.34 6.80 15 LS Contribution 249.83 15.07 3.76 3.76 Total: -1.00 -32.56 249.83 -3.98 -36.54 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -2.84 Total: -3.54 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -1.31 Total: -13.20 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 1.14 Total: -30.97 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.28 Total: -9.32 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.56 -3.98 -36.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640265.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.750 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds