Wall clock time and date at job start Thu Apr 9 2020 14:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35454 * 126.77530 * 2 1 4 4 C 1.41379 * 103.98454 * 180.09671 * 3 2 1 5 5 C 1.50697 * 126.80482 * 179.88883 * 4 3 2 6 6 C 1.50700 * 109.47266 * 124.71193 * 5 4 3 7 7 O 1.20755 * 119.99811 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99815 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.46817 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00302 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99832 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.46901 * 89.99815 * 13 11 9 15 15 H 1.48495 * 109.47068 * 210.00475 * 13 11 9 16 16 H 1.48508 * 109.46958 * 330.00281 * 13 11 9 17 17 N 1.30174 * 106.39863 * 359.63047 * 4 3 2 18 18 O 1.20926 * 111.60111 * 0.23743 * 17 4 3 19 19 H 1.08992 * 109.47121 * 180.30244 * 1 2 3 20 20 H 1.09003 * 109.47020 * 300.29715 * 1 2 3 21 21 H 1.08995 * 109.47074 * 60.29687 * 1 2 3 22 22 H 1.08000 * 128.01042 * 359.96867 * 3 2 1 23 23 H 1.09004 * 109.47205 * 4.71287 * 5 4 3 24 24 H 1.08997 * 109.47395 * 244.71779 * 5 4 3 25 25 H 1.09000 * 109.47318 * 299.99467 * 8 6 5 26 26 H 1.09000 * 109.47161 * 60.00098 * 8 6 5 27 27 H 0.97002 * 119.99998 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 -0.0023 5 6 4.9211 1.3000 -0.0056 6 6 5.7663 0.8573 1.1609 7 8 5.3558 0.0097 1.9166 8 6 7.1238 1.4726 1.3842 9 6 7.7577 0.8605 2.6066 10 1 7.2302 0.1021 3.1661 11 6 9.0107 1.2692 3.0114 12 7 9.5642 0.7347 4.0779 13 14 9.9228 2.5815 2.0441 14 1 9.5828 3.9217 2.5858 15 1 11.3858 2.3563 2.1623 16 1 9.5247 2.5096 0.6152 17 7 3.4764 -0.7563 0.0046 18 8 2.3095 -1.0736 0.0060 19 1 -0.3633 -1.0276 0.0054 20 1 -0.3633 0.5185 0.8873 21 1 -0.3633 0.5092 -0.8926 22 1 2.0345 2.1271 -0.0005 23 1 4.7163 2.3673 0.0784 24 1 5.4546 1.1047 -0.9358 25 1 7.7550 1.2852 0.5156 26 1 7.0160 2.5474 1.5299 27 1 10.4456 1.0226 4.3629 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259673191.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:05 Heat of formation + Delta-G solvation = 15.986673 kcal Electronic energy + Delta-G solvation = -13035.576853 eV Core-core repulsion = 10569.028361 eV Total energy + Delta-G solvation = -2466.548491 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.73311 -38.54089 -34.41478 -33.29518 -32.86053 -30.38934 -28.59331 -27.76312 -23.55731 -22.76999 -20.34915 -18.43836 -17.44531 -17.06112 -16.80746 -14.97568 -14.72925 -14.63680 -14.18125 -13.68147 -13.41542 -13.33848 -12.70396 -12.44882 -12.22981 -12.07674 -11.40605 -10.93683 -10.84432 -10.56617 -10.03952 -9.87436 -9.29036 -9.18334 -8.59043 -8.52911 -6.04265 -4.04600 1.63055 2.42367 2.92085 3.25148 3.26524 3.33208 3.34917 4.35617 4.40204 4.46430 4.92288 5.07977 5.22049 5.23005 5.26774 5.32025 5.57754 5.59025 5.74568 5.95688 6.11612 6.48353 6.67203 6.92505 7.60974 8.43079 8.52621 8.61508 9.12243 9.53953 11.08963 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.075989 B = 0.006423 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.386075 B = 4358.000291 C = 4552.927778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.047 4.047 3 C -0.231 4.231 4 C 0.029 3.971 5 C -0.102 4.102 6 C 0.360 3.640 7 O -0.437 6.437 8 C -0.058 4.058 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.068 3.932 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.265 1.265 17 N -0.341 5.341 18 O 0.101 5.899 19 H 0.080 0.920 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.169 0.831 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.842 3.953 -11.276 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C -0.253 4.253 4 C -0.130 4.130 5 C -0.141 4.141 6 C 0.232 3.768 7 O -0.308 6.308 8 C -0.095 4.095 9 C -0.559 4.559 10 H 0.106 0.894 11 C -0.133 4.133 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.190 1.190 17 N -0.043 5.043 18 O 0.032 5.968 19 H 0.099 0.901 20 H 0.106 0.894 21 H 0.105 0.895 22 H 0.186 0.814 23 H 0.131 0.869 24 H 0.128 0.872 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.030 2.454 -10.741 18.636 hybrid contribution 0.347 1.667 -0.465 1.765 sum -14.683 4.121 -11.206 18.925 Atomic orbital electron populations 1.20274 0.84348 1.04428 1.03750 1.24449 0.96298 0.86576 1.03691 1.22356 0.91376 1.00833 1.10706 1.23202 0.96722 0.90085 1.03003 1.20809 0.90615 1.00367 1.02271 1.24618 0.88936 0.80743 0.82456 1.90325 1.71702 1.25767 1.43008 1.20030 0.91677 0.97732 1.00105 1.21037 1.01984 1.23578 1.09261 0.89358 1.25005 0.97105 0.96323 0.94880 1.69906 1.16380 1.42938 1.24417 0.86854 0.79376 0.82403 0.81056 1.20119 1.21135 1.18973 1.73891 0.96085 1.16443 1.17894 1.84859 1.11467 1.33170 1.67281 0.90072 0.89423 0.89481 0.81360 0.86900 0.87189 0.93060 0.93482 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.01 0.38 -0.12 15 2 C -0.05 -0.58 7.49 -35.30 -0.26 -0.84 15 3 C -0.23 -3.04 11.05 -39.38 -0.44 -3.48 15 4 C 0.03 0.49 6.10 -82.10 -0.50 -0.01 15 5 C -0.10 -1.63 6.23 -29.04 -0.18 -1.81 15 6 C 0.36 7.89 7.14 -29.03 -0.21 7.68 15 7 O -0.44 -11.47 14.70 6.00 0.09 -11.39 15 8 C -0.06 -1.37 4.46 -29.03 -0.13 -1.50 15 9 C -0.52 -15.47 9.48 -34.44 -0.33 -15.79 15 10 H 0.09 2.98 7.00 -52.48 -0.37 2.61 15 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 12 N -0.90 -28.31 13.96 55.43 0.77 -27.54 15 13 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 15 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 16 H -0.27 -5.91 6.54 56.52 0.37 -5.54 15 17 N -0.34 -6.50 11.47 33.42 0.38 -6.12 15 18 O 0.10 1.63 11.20 17.18 0.19 1.82 15 19 H 0.08 0.49 8.14 -51.93 -0.42 0.07 15 20 H 0.09 0.52 8.14 -51.93 -0.42 0.09 15 21 H 0.09 0.44 8.14 -51.93 -0.42 0.02 15 22 H 0.17 1.63 8.06 -52.49 -0.42 1.21 15 23 H 0.11 1.39 8.14 -51.93 -0.42 0.97 15 24 H 0.11 1.52 8.14 -51.93 -0.42 1.10 15 25 H 0.05 1.15 7.20 -51.93 -0.37 0.77 15 26 H 0.05 1.02 7.57 -51.93 -0.39 0.62 15 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 15 LS Contribution 246.26 15.07 3.71 3.71 Total: -1.00 -36.15 246.26 -4.12 -40.28 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -2.84 Total: -3.21 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -1.77 Total: -13.96 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 1.16 Total: -33.66 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.28 Total: -9.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -36.15 -4.12 -40.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259673191.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.265 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds