Wall clock time and date at job start Thu Apr 9 2020 14:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47183 * 300.00291 * 3 2 1 6 6 H 1.48502 * 109.47142 * 59.99736 * 3 2 1 7 7 C 1.37881 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99562 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00293 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.42720 * 300.10177 * 9 7 2 11 11 C 1.53110 * 109.38860 * 180.23307 * 9 7 2 12 12 C 1.53544 * 109.51629 * 170.11379 * 11 9 7 13 13 C 1.50076 * 108.23464 * 49.20186 * 12 11 9 14 14 C 1.40635 * 130.47421 * 163.87057 * 13 12 11 15 15 O 1.35710 * 127.10097 * 0.10898 * 14 13 12 16 16 N 1.31139 * 105.80724 * 180.09106 * 14 13 12 17 17 O 1.21438 * 111.58485 * 359.97438 * 16 14 13 18 18 C 1.33247 * 111.43275 * 359.93964 * 17 16 14 19 19 C 1.50585 * 129.63686 * 180.23256 * 18 17 16 20 20 H 0.96993 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46296 * 50.09619 * 11 9 7 22 22 H 1.08999 * 109.46124 * 290.12488 * 11 9 7 23 23 H 1.09000 * 109.70966 * 289.52173 * 12 11 9 24 24 H 1.08998 * 109.71167 * 168.89248 * 12 11 9 25 25 H 0.96698 * 113.99523 * 89.99744 * 15 14 13 26 26 H 1.08997 * 109.69988 * 282.87114 * 19 18 17 27 27 H 1.09003 * 109.69359 * 43.46223 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6229 -2.5552 0.8896 11 6 2.2476 -3.6615 0.0071 12 6 1.4982 -4.9784 0.2556 13 6 0.3282 -5.0371 -0.6825 14 6 -0.4779 -6.1226 -1.0696 15 8 -0.3686 -7.4112 -0.6581 16 7 -1.3574 -5.6326 -1.9099 17 8 -1.1991 -4.4403 -2.0776 18 6 -0.1778 -3.9786 -1.3569 19 6 0.3691 -2.5795 -1.2520 20 1 -0.4849 0.8400 -0.0004 21 1 2.9814 -3.5063 0.7979 22 1 2.7562 -3.7092 -0.9558 23 1 1.1450 -5.0115 1.2862 24 1 2.1633 -5.8211 0.0671 25 1 -0.8855 -7.6166 0.1328 26 1 0.9652 -2.3509 -2.1354 27 1 -0.4533 -1.8689 -1.1692 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683907.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:06 Heat of formation + Delta-G solvation = 5.465359 kcal Electronic energy + Delta-G solvation = -13741.806959 eV Core-core repulsion = 11274.802229 eV Total energy + Delta-G solvation = -2467.004729 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.37796 -37.70394 -36.88294 -33.06543 -31.72507 -30.23162 -29.21254 -25.34155 -23.38746 -21.87727 -21.36110 -19.06754 -17.65801 -17.19738 -16.26097 -16.08594 -14.68790 -14.52388 -14.01846 -13.15282 -12.95998 -12.72569 -12.45763 -11.95316 -11.48440 -11.43863 -10.99705 -10.65541 -10.44853 -10.09152 -9.82736 -9.43590 -9.24294 -9.08713 -8.59395 -8.30849 -6.15566 -4.22032 1.94667 2.54754 3.22978 3.32481 3.35664 3.61370 3.88631 4.33498 5.10554 5.17934 5.36020 5.72324 5.81398 5.91340 6.13328 6.26260 6.48222 6.49824 6.58522 6.82676 6.89311 7.09142 7.48923 7.53946 7.68645 7.87167 8.23120 8.69308 8.82963 9.44824 10.91707 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.061059 B = 0.008832 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.464891 B = 3169.540505 C = 3501.699274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.113 4.113 12 C -0.037 4.037 13 C -0.239 4.239 14 C 0.202 3.798 15 O -0.454 6.454 16 N -0.401 5.401 17 O 0.103 5.897 18 C 0.014 3.986 19 C -0.036 4.036 20 H 0.264 0.736 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.395 0.605 26 H 0.078 0.922 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 -6.847 0.526 6.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.150 4.150 12 C -0.075 4.075 13 C -0.245 4.245 14 C 0.004 3.996 15 O -0.258 6.258 16 N -0.119 5.119 17 O 0.040 5.960 18 C -0.050 4.050 19 C -0.074 4.074 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.251 0.749 26 H 0.096 0.904 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.258 -7.364 -0.613 7.394 hybrid contribution 0.578 0.814 0.871 1.325 sum 0.320 -6.550 0.258 6.563 Atomic orbital electron populations 1.69856 1.05975 1.26914 1.50092 1.25023 0.94900 0.99398 0.94610 0.86486 0.80145 0.83433 0.77682 1.19678 1.20903 1.20977 1.21170 0.93167 0.89892 1.51160 0.91967 1.18751 0.92341 0.92636 0.92720 0.94761 1.21792 0.98747 0.93487 1.01009 1.19915 0.92244 0.99331 0.95971 1.20870 1.04601 0.91646 1.07394 1.20784 0.94749 0.86074 0.97956 1.84768 1.70704 1.20954 1.49376 1.74364 1.22875 0.92944 1.21746 1.84771 1.41955 1.15927 1.53360 1.25305 0.87759 1.00213 0.91689 1.20927 1.01071 0.83978 1.01471 0.92654 0.91929 0.92879 0.91346 0.91733 0.74940 0.90412 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.70 11.46 55.43 0.64 -23.07 15 2 C 0.06 1.61 5.30 -17.82 -0.09 1.52 15 3 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -13.01 8.52 -34.44 -0.29 -13.30 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.05 1.24 2.06 -91.51 -0.19 1.05 15 10 H 0.03 0.86 8.12 -51.93 -0.42 0.43 15 11 C -0.11 -2.18 5.16 -26.39 -0.14 -2.32 15 12 C -0.04 -0.64 6.30 -27.90 -0.18 -0.82 15 13 C -0.24 -4.60 6.09 -105.06 -0.64 -5.24 15 14 C 0.20 3.77 8.61 -16.94 -0.15 3.63 15 15 O -0.45 -6.96 13.65 -18.83 -0.26 -7.22 15 16 N -0.40 -8.04 12.13 30.41 0.37 -7.67 15 17 O 0.10 2.09 11.19 19.05 0.21 2.31 15 18 C 0.01 0.29 7.38 -35.40 -0.26 0.03 15 19 C -0.04 -0.80 5.20 -27.73 -0.14 -0.94 15 20 H 0.26 6.71 8.31 -40.82 -0.34 6.37 15 21 H 0.06 1.16 8.11 -51.93 -0.42 0.74 15 22 H 0.05 1.02 8.12 -51.93 -0.42 0.59 15 23 H 0.07 1.12 8.14 -51.93 -0.42 0.69 15 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 25 H 0.40 3.87 9.06 45.56 0.41 4.29 15 26 H 0.08 1.68 8.12 -51.93 -0.42 1.26 15 27 H 0.11 2.76 6.44 -51.93 -0.33 2.42 15 LS Contribution 234.21 15.07 3.53 3.53 Total: -1.00 -27.89 234.21 -4.60 -32.50 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -1.99 Total: 1.05 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.08 Total: -16.39 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 1.00 Total: -30.74 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.04 Total: -4.91 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.89 -4.60 -32.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683907.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.961 kcal (2) G-P(sol) polarization free energy of solvation -27.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds