Wall clock time and date at job start Thu Apr 9 2020 14:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47183 * 300.00291 * 3 2 1 6 6 H 1.48502 * 109.47142 * 59.99736 * 3 2 1 7 7 C 1.37881 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99562 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00293 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.42720 * 300.10177 * 9 7 2 11 11 C 1.53110 * 109.38860 * 180.23307 * 9 7 2 12 12 C 1.53544 * 109.51629 * 170.11379 * 11 9 7 13 13 C 1.50076 * 108.23464 * 49.20186 * 12 11 9 14 14 C 1.40635 * 130.47421 * 163.87057 * 13 12 11 15 15 O 1.35710 * 127.10097 * 0.10898 * 14 13 12 16 16 N 1.31139 * 105.80724 * 180.09106 * 14 13 12 17 17 O 1.21438 * 111.58485 * 359.97438 * 16 14 13 18 18 C 1.33247 * 111.43275 * 359.93964 * 17 16 14 19 19 C 1.50585 * 129.63686 * 180.23256 * 18 17 16 20 20 H 0.96993 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46296 * 50.09619 * 11 9 7 22 22 H 1.08999 * 109.46124 * 290.12488 * 11 9 7 23 23 H 1.09000 * 109.70966 * 289.52173 * 12 11 9 24 24 H 1.08998 * 109.71167 * 168.89248 * 12 11 9 25 25 H 0.96698 * 113.99523 * 89.99744 * 15 14 13 26 26 H 1.08997 * 109.69988 * 282.87114 * 19 18 17 27 27 H 1.09003 * 109.69359 * 43.46223 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6229 -2.5552 0.8896 11 6 2.2476 -3.6615 0.0071 12 6 1.4982 -4.9784 0.2556 13 6 0.3282 -5.0371 -0.6825 14 6 -0.4779 -6.1226 -1.0696 15 8 -0.3686 -7.4112 -0.6581 16 7 -1.3574 -5.6326 -1.9099 17 8 -1.1991 -4.4403 -2.0776 18 6 -0.1778 -3.9786 -1.3569 19 6 0.3691 -2.5795 -1.2520 20 1 -0.4849 0.8400 -0.0004 21 1 2.9814 -3.5063 0.7979 22 1 2.7562 -3.7092 -0.9558 23 1 1.1450 -5.0115 1.2862 24 1 2.1633 -5.8211 0.0671 25 1 -0.8855 -7.6166 0.1328 26 1 0.9652 -2.3509 -2.1354 27 1 -0.4533 -1.8689 -1.1692 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259683907.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:06 Heat of formation + Delta-G solvation = -14.276197 kcal Electronic energy + Delta-G solvation = -13742.663017 eV Core-core repulsion = 11274.802229 eV Total energy + Delta-G solvation = -2467.860788 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.89791 -39.06065 -38.46138 -34.85390 -33.31248 -31.83029 -30.86818 -27.19852 -24.97132 -23.37146 -22.99083 -20.63419 -19.12826 -18.78868 -18.12342 -17.58229 -16.46223 -16.01066 -15.52383 -14.64059 -14.59261 -14.45240 -14.01903 -13.44361 -13.19640 -13.10050 -12.74467 -12.40600 -12.24076 -11.55604 -11.50330 -11.05122 -10.91816 -10.85034 -10.49809 -9.91469 -8.10576 -6.23344 0.40304 1.08884 1.45770 1.50064 1.59742 2.05825 2.46422 2.50168 3.21497 3.58930 3.87156 4.24622 4.33928 4.50995 4.55581 4.75753 4.84806 4.91293 5.08289 5.23171 5.26853 5.42025 5.63618 5.87228 5.98173 6.32614 6.44980 6.87839 7.15397 7.46713 8.95705 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.061059 B = 0.008832 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.464891 B = 3169.540505 C = 3501.699274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.052 3.948 10 H 0.007 0.993 11 C -0.107 4.107 12 C -0.031 4.031 13 C -0.236 4.236 14 C 0.217 3.783 15 O -0.450 6.450 16 N -0.415 5.415 17 O 0.090 5.910 18 C -0.003 4.003 19 C -0.025 4.025 20 H 0.263 0.737 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.422 0.578 26 H 0.074 0.926 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -7.952 0.937 8.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.033 3.967 10 H 0.025 0.975 11 C -0.144 4.144 12 C -0.068 4.068 13 C -0.241 4.241 14 C 0.019 3.981 15 O -0.258 6.258 16 N -0.136 5.136 17 O 0.030 5.970 18 C -0.067 4.067 19 C -0.063 4.063 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.073 0.927 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.282 0.718 26 H 0.093 0.907 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.716 -8.475 -0.182 8.507 hybrid contribution 0.255 1.066 0.774 1.341 sum 0.971 -7.410 0.592 7.496 Atomic orbital electron populations 1.69983 1.07201 1.27477 1.51034 1.25729 0.95573 1.02403 0.94503 0.85562 0.79267 0.79793 0.77373 1.18926 1.20867 1.21039 1.21521 0.93430 0.91125 1.50670 0.91876 1.18696 0.92722 0.93511 0.91743 0.97477 1.21686 0.98111 0.93132 1.01490 1.19956 0.91726 0.98922 0.96242 1.21152 1.04829 0.91316 1.06852 1.20799 0.93563 0.86937 0.96835 1.84734 1.71359 1.18806 1.50940 1.74354 1.23739 0.92758 1.22745 1.84749 1.42155 1.16323 1.53790 1.25017 0.88704 0.99920 0.93071 1.20556 1.00083 0.84645 1.01064 0.92768 0.90982 0.92749 0.89944 0.89073 0.71781 0.90727 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.78 11.46 21.45 0.25 -49.53 15 2 C 0.02 0.89 5.30 84.66 0.45 1.34 15 3 Si 0.95 40.97 29.54 68.60 2.03 43.00 15 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 7 C -0.53 -26.68 8.52 25.60 0.22 -26.47 15 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 15 9 C 0.05 2.39 2.06 -11.37 -0.02 2.36 15 10 H 0.01 0.36 8.12 -2.39 -0.02 0.34 15 11 C -0.11 -3.94 5.16 30.81 0.16 -3.78 15 12 C -0.03 -0.99 6.30 29.84 0.19 -0.80 15 13 C -0.24 -8.62 6.09 -20.15 -0.12 -8.74 15 14 C 0.22 7.57 8.61 85.38 0.74 8.30 15 15 O -0.45 -12.18 13.65 -90.31 -1.23 -13.41 15 16 N -0.41 -16.09 12.13 -171.56 -2.08 -18.17 15 17 O 0.09 3.67 11.19 78.19 0.87 4.54 15 18 C 0.00 -0.14 7.38 24.98 0.18 0.04 15 19 C -0.02 -1.12 5.20 29.95 0.16 -0.96 15 20 H 0.26 13.65 8.31 -92.71 -0.77 12.88 15 21 H 0.07 2.51 8.11 -2.39 -0.02 2.49 15 22 H 0.05 1.98 8.12 -2.39 -0.02 1.96 15 23 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.42 6.58 9.06 -74.06 -0.67 5.91 15 26 H 0.07 3.30 8.12 -2.39 -0.02 3.28 15 27 H 0.09 4.39 6.44 -2.39 -0.02 4.38 15 Total: -1.00 -58.46 234.21 2.30 -56.16 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.52 Total: 6.12 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 1.94 Total: -28.70 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -1.83 Total: -67.70 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.36 Total: -8.87 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -58.46 2.30 -56.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683907.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.886 kcal (2) G-P(sol) polarization free energy of solvation -58.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds