Wall clock time and date at job start Thu Apr 9 2020 14:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35558 * 125.23008 * 2 1 4 4 C 1.40889 * 107.88952 * 180.26662 * 3 2 1 5 5 C 1.46814 * 126.75833 * 179.71682 * 4 3 2 6 6 O 1.21600 * 120.00112 * 185.25649 * 5 4 3 7 7 O 1.34891 * 119.99554 * 5.26072 * 5 4 3 8 8 C 1.41506 * 106.49081 * 359.58166 * 4 3 2 9 9 C 1.39216 * 126.45936 * 180.13542 * 8 4 3 10 10 H 1.08003 * 120.00442 * 38.27905 * 9 8 4 11 11 C 1.40598 * 120.00132 * 218.27761 * 9 8 4 12 12 N 1.30507 * 119.99493 * 20.57755 * 11 9 8 13 13 Si 1.86799 * 120.00061 * 200.57054 * 11 9 8 14 14 H 1.48495 * 109.47155 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46905 * 120.00508 * 13 11 9 16 16 H 1.48503 * 109.47145 * 239.99945 * 13 11 9 17 17 N 1.36129 * 125.22213 * 180.02562 * 2 1 3 18 18 C 1.46499 * 125.50657 * 359.96429 * 17 2 1 19 19 H 1.09002 * 109.46685 * 89.97272 * 1 2 3 20 20 H 1.08999 * 109.47197 * 209.97879 * 1 2 3 21 21 H 1.09000 * 109.46357 * 329.97661 * 1 2 3 22 22 H 1.07998 * 126.05922 * 359.97438 * 3 2 1 23 23 H 0.96706 * 116.99795 * 180.02562 * 7 5 4 24 24 H 0.96998 * 119.99630 * 184.03162 * 12 11 9 25 25 H 1.08997 * 109.47626 * 90.02596 * 18 17 2 26 26 H 1.09005 * 109.47194 * 210.02474 * 18 17 2 27 27 H 1.09009 * 109.46905 * 330.02107 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2890 1.1073 0.0000 4 6 3.6338 0.6874 -0.0062 5 6 4.8230 1.5483 -0.0143 6 8 5.9300 1.0552 -0.1156 7 8 4.6877 2.8863 0.0908 8 6 3.6129 -0.7275 -0.0001 9 6 4.7202 -1.5713 -0.0004 10 1 5.5969 -1.3122 0.5747 11 6 4.6973 -2.7609 -0.7495 12 7 3.8529 -2.8949 -1.7355 13 14 5.8756 -4.1494 -0.3334 14 1 6.7236 -3.7506 0.8185 15 1 5.1015 -5.3663 0.0202 16 1 6.7380 -4.4354 -1.5081 17 7 2.2921 -1.1121 -0.0005 18 6 1.8086 -2.4950 -0.0004 19 1 -0.3633 0.0005 -1.0277 20 1 -0.3633 -0.8902 0.5135 21 1 -0.3632 0.8898 0.5142 22 1 1.9425 2.1302 -0.0004 23 1 5.4994 3.4118 0.0805 24 1 3.7965 -3.7364 -2.2147 25 1 1.6886 -2.8381 -1.0279 26 1 2.5289 -3.1317 0.5134 27 1 0.8486 -2.5442 0.5137 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259729088.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:08 Heat of formation + Delta-G solvation = -65.046101 kcal Electronic energy + Delta-G solvation = -13792.206358 eV Core-core repulsion = 11322.144022 eV Total energy + Delta-G solvation = -2470.062336 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.67328 -38.16594 -34.62133 -33.80868 -31.41531 -30.54208 -27.35291 -25.82666 -23.63719 -21.80002 -18.93376 -18.47096 -16.92897 -16.52906 -15.34286 -14.84470 -14.32958 -13.88324 -13.79389 -12.99435 -12.47262 -12.36512 -12.20392 -11.71207 -11.58825 -11.21965 -11.07428 -10.92627 -10.75646 -10.36516 -10.26445 -10.13421 -9.06328 -9.02478 -7.33008 -7.05928 -6.66720 -4.47110 2.82037 3.05839 3.14418 3.21172 3.66913 3.91858 4.16886 4.51419 4.79627 5.17647 5.84579 5.93917 5.97181 6.18372 6.35644 6.48235 6.61048 6.74329 6.90734 7.08128 7.40740 7.43626 7.77431 7.80368 8.17889 8.54008 8.59464 8.87141 9.11467 9.47344 10.06166 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.015325 C = 0.010076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.009387 B = 1826.649390 C = 2778.128238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.069 4.069 3 C -0.131 4.131 4 C -0.340 4.340 5 C 0.545 3.455 6 O -0.552 6.552 7 O -0.535 6.535 8 C 0.320 3.680 9 C -0.443 4.443 10 H 0.104 0.896 11 C 0.077 3.923 12 N -0.796 5.796 13 Si 0.908 3.092 14 H -0.257 1.257 15 H -0.273 1.273 16 H -0.273 1.273 17 N -0.456 5.456 18 C 0.105 3.895 19 H 0.050 0.950 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.116 0.884 23 H 0.388 0.612 24 H 0.282 0.718 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 -0.011 2.240 4.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.172 4.172 3 C -0.156 4.156 4 C -0.346 4.346 5 C 0.397 3.603 6 O -0.446 6.446 7 O -0.346 6.346 8 C 0.205 3.795 9 C -0.477 4.477 10 H 0.122 0.878 11 C -0.142 4.142 12 N -0.424 5.424 13 Si 0.732 3.268 14 H -0.180 1.180 15 H -0.198 1.198 16 H -0.198 1.198 17 N -0.139 5.139 18 C -0.038 4.038 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.134 0.866 23 H 0.242 0.758 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.538 -0.770 2.015 5.025 hybrid contribution 0.973 -0.350 -0.092 1.038 sum -3.565 -1.120 1.924 4.203 Atomic orbital electron populations 1.20037 0.90481 1.01079 1.00622 1.19731 0.92057 0.86522 1.18933 1.20207 0.92199 0.95685 1.07550 1.18116 0.89937 0.91234 1.35279 1.20050 0.88868 0.78823 0.72525 1.90765 1.28218 1.74954 1.50628 1.84678 1.40998 1.21349 1.87534 1.17613 0.82596 0.89893 0.89382 1.18814 0.99998 1.02894 1.25971 0.87819 1.25969 0.96142 0.99336 0.92740 1.69773 1.33059 1.25941 1.13653 0.86245 0.80827 0.79735 0.80010 1.18018 1.19774 1.19807 1.43853 1.05549 1.04377 1.60088 1.21672 0.97644 0.82079 1.02389 0.93078 0.93334 0.91924 0.86641 0.75794 0.90679 0.91108 0.91409 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.06 36.01 0.36 -0.75 15 2 C -0.07 -1.56 6.86 -81.64 -0.56 -2.12 15 3 C -0.13 -3.15 10.53 -39.54 -0.42 -3.56 15 4 C -0.34 -9.13 6.22 -104.18 -0.65 -9.78 15 5 C 0.54 14.02 8.31 34.20 0.28 14.30 15 6 O -0.55 -15.43 16.29 -19.34 -0.32 -15.75 15 7 O -0.54 -11.13 13.29 -41.02 -0.55 -11.67 15 8 C 0.32 8.74 6.13 -83.69 -0.51 8.22 15 9 C -0.44 -12.12 8.08 -38.33 -0.31 -12.43 15 10 H 0.10 2.95 7.34 -52.48 -0.39 2.56 15 11 C 0.08 1.91 4.04 -17.22 -0.07 1.84 15 12 N -0.80 -19.85 10.61 55.58 0.59 -19.26 15 13 Si 0.91 18.71 29.61 -169.99 -5.03 13.67 15 14 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 15 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 17 N -0.46 -11.09 3.12 -116.77 -0.36 -11.45 15 18 C 0.10 2.17 8.99 59.85 0.54 2.71 15 19 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.05 0.76 6.96 -51.93 -0.36 0.39 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.12 2.49 8.06 -52.49 -0.42 2.07 15 23 H 0.39 5.92 9.11 45.56 0.42 6.34 15 24 H 0.28 6.33 8.29 -40.82 -0.34 5.99 15 25 H 0.07 1.50 6.95 -51.93 -0.36 1.14 15 26 H 0.07 1.42 6.96 -51.93 -0.36 1.06 15 27 H 0.05 0.84 6.93 -51.92 -0.36 0.48 15 LS Contribution 240.35 15.07 3.62 3.62 Total: -1.00 -31.34 240.35 -5.20 -36.54 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -1.82 Total: 5.86 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.33 Total: -1.56 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.23 Total: -30.71 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.86 Total: -27.42 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.34 -5.20 -36.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729088.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.506 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds