Wall clock time and date at job start Thu Apr 9 2020 14:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35889 * 117.00076 * 2 1 4 4 N 1.33229 * 126.07938 * 359.69159 * 3 2 1 5 5 C 1.32917 * 108.66934 * 179.86678 * 4 3 2 6 6 C 1.39646 * 125.72074 * 180.11283 * 5 4 3 7 7 H 1.08002 * 120.00038 * 180.32756 * 6 5 4 8 8 C 1.40300 * 119.99780 * 0.32904 * 6 5 4 9 9 N 1.30646 * 120.00182 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99948 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47091 * 90.00076 * 10 8 6 12 12 H 1.48504 * 109.46888 * 210.00127 * 10 8 6 13 13 H 1.48502 * 109.46900 * 329.99629 * 10 8 6 14 14 O 1.34933 * 108.55798 * 0.39671 * 5 4 3 15 15 C 1.34696 * 107.68407 * 359.75520 * 14 5 4 16 16 C 1.50694 * 126.38189 * 180.02562 * 15 14 5 17 17 C 1.53011 * 117.49387 * 8.70614 * 16 15 14 18 18 C 1.53002 * 117.49656 * 300.05136 * 16 15 14 19 19 H 1.09002 * 109.47382 * 300.00080 * 1 2 3 20 20 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46926 * 60.00187 * 1 2 3 22 22 H 0.97008 * 120.00401 * 179.97438 * 9 8 6 23 23 H 1.08995 * 115.55685 * 154.37135 * 16 15 14 24 24 H 1.08996 * 117.49756 * 359.97438 * 17 16 15 25 25 H 1.08994 * 117.49658 * 145.02275 * 17 16 15 26 26 H 1.08999 * 117.49532 * 214.97635 * 18 16 15 27 27 H 1.08998 * 117.49849 * 359.97008 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 7 1.4428 2.3987 -0.0058 5 6 2.3729 3.3482 -0.0007 6 6 2.1336 4.7240 -0.0021 7 1 2.9625 5.4163 -0.0029 8 6 0.8163 5.2068 -0.0023 9 7 -0.1865 4.3693 -0.0018 10 14 0.4960 7.0472 -0.0033 11 1 0.4111 7.5341 -1.4037 12 1 -0.7834 7.3274 0.6967 13 1 1.6058 7.7431 0.6964 14 8 3.5872 2.7598 -0.0004 15 6 3.3959 1.4265 0.0001 16 6 4.4698 0.3694 0.0011 17 6 5.9143 0.8300 0.2071 18 6 5.4506 0.3576 -1.1731 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -1.0973 4.7031 -0.0015 23 1 4.1827 -0.5921 0.4267 24 1 6.0877 1.8977 0.3414 25 1 6.5774 0.1714 0.7678 26 1 5.8089 -0.6117 -1.5198 27 1 5.3187 1.1142 -1.9466 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739604.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:09 Heat of formation + Delta-G solvation = -22.892806 kcal Electronic energy + Delta-G solvation = -13573.794042 eV Core-core repulsion = 11105.559610 eV Total energy + Delta-G solvation = -2468.234432 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.09901 -39.13492 -37.81949 -35.83404 -33.96849 -31.01205 -28.72330 -27.09458 -23.72091 -23.23778 -22.57776 -21.22728 -19.63659 -18.45483 -17.25374 -16.82259 -16.73407 -16.06702 -15.81181 -15.52078 -14.96446 -13.93085 -13.57837 -13.10471 -13.00771 -12.74425 -12.52881 -12.49732 -12.36446 -11.99304 -11.78610 -11.34483 -11.30477 -10.64688 -10.35499 -8.93325 -8.67128 -6.71487 0.99605 1.40131 1.54577 1.58864 2.14234 2.33243 2.38268 2.79010 3.13970 3.21267 3.90356 4.04212 4.25414 4.28522 4.44283 4.49473 4.76855 4.77367 4.79749 5.01334 5.05462 5.15931 5.30960 5.43061 5.81547 5.91516 6.35902 6.46731 6.80974 7.78121 8.28716 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.034760 B = 0.010577 C = 0.008312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.327749 B = 2646.704306 C = 3368.014849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.307 6.307 3 C 0.183 3.817 4 N -0.595 5.595 5 C 0.315 3.685 6 C -0.457 4.457 7 H 0.106 0.894 8 C 0.030 3.970 9 N -0.765 5.765 10 Si 1.017 2.983 11 H -0.257 1.257 12 H -0.263 1.263 13 H -0.250 1.250 14 O -0.247 6.247 15 C -0.200 4.200 16 C -0.052 4.052 17 C -0.165 4.165 18 C -0.168 4.168 19 H 0.034 0.966 20 H 0.131 0.869 21 H 0.034 0.966 22 H 0.290 0.710 23 H 0.130 0.870 24 H 0.075 0.925 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -2.906 -0.247 4.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.218 6.218 3 C 0.017 3.983 4 N -0.337 5.337 5 C 0.133 3.867 6 C -0.492 4.492 7 H 0.124 0.876 8 C -0.192 4.192 9 N -0.389 5.389 10 Si 0.834 3.166 11 H -0.181 1.181 12 H -0.187 1.187 13 H -0.173 1.173 14 O -0.145 6.145 15 C -0.253 4.253 16 C -0.071 4.071 17 C -0.202 4.202 18 C -0.205 4.205 19 H 0.053 0.947 20 H 0.149 0.851 21 H 0.053 0.947 22 H 0.101 0.899 23 H 0.148 0.852 24 H 0.093 0.907 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.223 -3.092 -0.251 3.816 hybrid contribution -0.035 0.588 -0.009 0.590 sum 2.188 -2.503 -0.260 3.335 Atomic orbital electron populations 1.22798 0.77264 1.03564 1.00611 1.85974 1.22859 1.22390 1.90574 1.20210 0.89988 0.86319 1.01757 1.71286 1.31117 0.96267 1.35053 1.22313 0.75637 0.95067 0.93706 1.18732 0.95611 0.86295 1.48565 0.87610 1.27090 0.93743 1.06648 0.91697 1.70079 1.00751 1.39200 1.28877 0.84711 0.79175 0.72831 0.79898 1.18139 1.18674 1.17304 1.84401 1.34620 1.18152 1.77326 1.21161 0.93002 0.81900 1.29238 1.19935 0.87062 0.94721 1.05338 1.22991 0.95652 1.01588 0.99969 1.23097 1.02610 1.03479 0.91275 0.94679 0.85073 0.94712 0.89926 0.85217 0.90672 0.85389 0.85416 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.11 10.71 113.37 1.21 3.33 15 2 O -0.31 -14.70 10.54 -92.30 -0.97 -15.67 15 3 C 0.18 10.15 7.69 84.12 0.65 10.79 15 4 N -0.59 -36.08 8.83 -421.79 -3.73 -39.81 15 5 C 0.32 19.06 7.73 84.87 0.66 19.72 15 6 C -0.46 -25.55 9.44 23.11 0.22 -25.33 15 7 H 0.11 5.43 7.85 -2.91 -0.02 5.40 15 8 C 0.03 1.53 5.50 85.37 0.47 2.00 15 9 N -0.76 -41.52 11.87 21.89 0.26 -41.26 15 10 Si 1.02 36.95 29.56 68.60 2.03 38.98 15 11 H -0.26 -8.91 7.11 99.48 0.71 -8.20 15 12 H -0.26 -8.97 7.11 99.48 0.71 -8.26 15 13 H -0.25 -8.63 7.11 99.48 0.71 -7.93 15 14 O -0.25 -14.15 10.58 -12.66 -0.13 -14.28 15 15 C -0.20 -10.46 6.91 25.32 0.18 -10.29 15 16 C -0.05 -2.06 6.24 -11.54 -0.07 -2.14 15 17 C -0.17 -5.36 10.18 30.62 0.31 -5.05 15 18 C -0.17 -5.46 10.24 30.62 0.31 -5.15 15 19 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 20 H 0.13 3.76 8.14 -2.39 -0.02 3.74 15 21 H 0.03 1.47 8.14 -2.38 -0.02 1.45 15 22 H 0.29 13.92 8.29 -92.70 -0.77 13.15 15 23 H 0.13 4.63 8.14 -2.39 -0.02 4.61 15 24 H 0.07 2.74 8.00 -2.39 -0.02 2.72 15 25 H 0.13 3.15 8.14 -2.39 -0.02 3.13 15 26 H 0.13 3.17 8.14 -2.39 -0.02 3.15 15 27 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 Total: -1.00 -69.70 248.49 2.56 -67.13 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.17 Total: 17.02 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 3.93 Total: -12.11 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -3.47 Total: -81.07 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.11 Total: -29.95 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -69.70 2.56 -67.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739604.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.241 kcal (2) G-P(sol) polarization free energy of solvation -69.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds