Wall clock time and date at job start Thu Apr 9 2020 14:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48504 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00070 * 3 2 1 6 6 H 1.48503 * 109.47232 * 60.00250 * 3 2 1 7 7 C 1.37876 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99286 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.08990 * 109.46364 * 60.01799 * 9 7 2 11 11 C 1.53105 * 109.45939 * 180.02562 * 9 7 2 12 12 C 1.53436 * 109.72477 * 189.81755 * 11 9 7 13 13 C 1.50586 * 108.31074 * 309.99112 * 12 11 9 14 14 O 1.33235 * 129.63455 * 196.76196 * 13 12 11 15 15 N 1.21443 * 111.43140 * 179.90304 * 14 13 12 16 16 C 1.31129 * 111.58494 * 0.03680 * 15 14 13 17 17 O 1.35707 * 127.09856 * 180.02562 * 16 15 14 18 18 C 1.35329 * 123.79332 * 16.76141 * 13 12 11 19 19 C 1.50074 * 124.91523 * 0.13176 * 18 13 12 20 20 H 0.96999 * 119.99876 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.43463 * 69.74262 * 11 9 7 22 22 H 1.08995 * 109.43070 * 309.89350 * 11 9 7 23 23 H 1.09004 * 109.69378 * 69.69431 * 12 11 9 24 24 H 1.08998 * 109.69750 * 190.27779 * 12 11 9 25 25 H 0.96705 * 114.00126 * 270.02908 * 17 16 15 26 26 H 1.08999 * 109.70563 * 256.48811 * 19 18 13 27 27 H 1.08999 * 109.74229 * 135.88015 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6251 -2.5571 -0.8898 11 6 2.2462 -3.6627 0.0018 12 6 1.5014 -4.9814 -0.2444 13 6 0.3347 -5.0502 0.7051 14 8 -0.4030 -6.0978 1.0706 15 7 -1.2663 -5.7780 1.8625 16 6 -1.2247 -4.4948 2.1294 17 8 -2.0395 -3.8063 2.9682 18 6 -0.1616 -3.9790 1.3666 19 6 0.3668 -2.5790 1.2532 20 1 -0.4850 0.8400 0.0004 21 1 2.7516 -3.7065 0.9665 22 1 2.9835 -3.5101 -0.7863 23 1 1.1407 -5.0130 -1.2726 24 1 2.1722 -5.8213 -0.0640 25 1 -2.8316 -3.4501 2.5429 26 1 0.9577 -2.3365 2.1364 27 1 -0.4633 -1.8784 1.1625 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259753694.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:12 Heat of formation + Delta-G solvation = 6.816526 kcal Electronic energy + Delta-G solvation = -13798.991636 eV Core-core repulsion = 11332.045497 eV Total energy + Delta-G solvation = -2466.946138 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.40262 -37.56634 -36.84454 -32.83423 -32.10017 -30.04681 -29.19599 -25.43712 -23.06261 -21.87539 -21.48785 -18.88986 -17.96294 -17.12023 -16.25453 -15.99690 -14.68921 -14.47134 -13.80318 -13.23047 -12.95403 -12.68735 -12.45683 -11.86270 -11.47835 -11.40446 -10.97428 -10.62720 -10.44610 -10.23163 -9.72549 -9.36738 -9.20644 -8.94000 -8.55148 -8.25936 -6.09318 -4.14957 1.87608 2.64289 3.25406 3.34227 3.37390 3.51638 3.95428 4.37088 5.14433 5.21006 5.51520 5.66598 5.71293 5.72751 6.09752 6.21358 6.46258 6.47500 6.64738 6.90825 6.96523 7.25445 7.61839 7.67797 7.80036 7.95203 8.30664 8.66599 8.88912 9.50931 10.97965 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.044162 B = 0.010078 C = 0.008516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.871542 B = 2777.613214 C = 3287.189655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.047 3.953 10 H 0.031 0.969 11 C -0.110 4.110 12 C -0.032 4.032 13 C -0.041 4.041 14 O 0.105 5.895 15 N -0.398 5.398 16 C 0.200 3.800 17 O -0.451 6.451 18 C -0.189 4.189 19 C -0.036 4.036 20 H 0.261 0.739 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.398 0.602 26 H 0.060 0.940 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -6.370 -0.008 6.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.029 3.971 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.070 4.070 13 C -0.104 4.104 14 O 0.039 5.961 15 N -0.115 5.115 16 C 0.003 3.997 17 O -0.255 6.255 18 C -0.195 4.195 19 C -0.074 4.074 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.254 0.746 26 H 0.078 0.922 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.489 -7.308 0.872 7.376 hybrid contribution 0.116 1.809 -0.246 1.829 sum -0.373 -5.499 0.626 5.547 Atomic orbital electron populations 1.69889 1.05954 1.26548 1.50502 1.24991 0.94869 0.99239 0.94828 0.86528 0.80164 0.83675 0.77599 1.19717 1.21035 1.21009 1.21185 0.93049 0.90229 1.50914 0.92245 1.18807 0.92475 0.92110 0.93706 0.95087 1.21780 0.98810 0.92756 1.01401 1.20339 0.90491 1.00600 0.95569 1.24070 0.98289 0.86118 1.01962 1.84691 1.33404 1.33902 1.44144 1.74334 1.10534 1.16414 1.10199 1.20893 0.95304 0.88060 0.95476 1.84770 1.37290 1.69640 1.33849 1.21751 0.98136 1.00803 0.98763 1.20264 1.00961 0.86273 0.99884 0.92939 0.92601 0.91255 0.89563 0.90414 0.74622 0.92168 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 11.47 55.43 0.64 -23.65 15 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 15 3 Si 0.89 20.44 29.54 -169.99 -5.02 15.41 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.52 -13.31 8.52 -34.44 -0.29 -13.60 15 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 15 9 C 0.05 1.10 2.09 -91.44 -0.19 0.91 15 10 H 0.03 0.78 8.12 -51.93 -0.42 0.36 15 11 C -0.11 -2.05 5.13 -26.45 -0.14 -2.19 15 12 C -0.03 -0.51 6.31 -27.71 -0.17 -0.68 15 13 C -0.04 -0.76 7.38 -35.40 -0.26 -1.02 15 14 O 0.10 1.95 11.19 19.08 0.21 2.16 15 15 N -0.40 -7.87 12.13 30.41 0.37 -7.50 15 16 C 0.20 4.01 8.61 -16.95 -0.15 3.86 15 17 O -0.45 -8.07 13.65 -18.82 -0.26 -8.33 15 18 C -0.19 -3.94 6.09 -105.06 -0.64 -4.58 15 19 C -0.04 -0.83 5.18 -27.90 -0.14 -0.97 15 20 H 0.26 6.81 8.31 -40.82 -0.34 6.47 15 21 H 0.06 1.04 8.12 -51.93 -0.42 0.62 15 22 H 0.07 1.22 8.11 -51.93 -0.42 0.80 15 23 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.40 5.09 9.06 45.56 0.41 5.50 15 26 H 0.06 1.44 8.11 -51.93 -0.42 1.02 15 27 H 0.10 2.54 6.47 -51.93 -0.34 2.21 15 LS Contribution 234.24 15.07 3.53 3.53 Total: -1.00 -28.97 234.24 -4.61 -33.58 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -2.00 Total: 1.51 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.08 Total: -16.72 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 1.00 Total: -31.15 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.04 Total: -6.17 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.97 -4.61 -33.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259753694.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.397 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds