Wall clock time and date at job start Thu Apr 9 2020 14:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99761 * 2 1 4 4 H 1.48504 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00070 * 3 2 1 6 6 H 1.48503 * 109.47232 * 60.00250 * 3 2 1 7 7 C 1.37876 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99286 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.08990 * 109.46364 * 60.01799 * 9 7 2 11 11 C 1.53105 * 109.45939 * 180.02562 * 9 7 2 12 12 C 1.53436 * 109.72477 * 189.81755 * 11 9 7 13 13 C 1.50586 * 108.31074 * 309.99112 * 12 11 9 14 14 O 1.33235 * 129.63455 * 196.76196 * 13 12 11 15 15 N 1.21443 * 111.43140 * 179.90304 * 14 13 12 16 16 C 1.31129 * 111.58494 * 0.03680 * 15 14 13 17 17 O 1.35707 * 127.09856 * 180.02562 * 16 15 14 18 18 C 1.35329 * 123.79332 * 16.76141 * 13 12 11 19 19 C 1.50074 * 124.91523 * 0.13176 * 18 13 12 20 20 H 0.96999 * 119.99876 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.43463 * 69.74262 * 11 9 7 22 22 H 1.08995 * 109.43070 * 309.89350 * 11 9 7 23 23 H 1.09004 * 109.69378 * 69.69431 * 12 11 9 24 24 H 1.08998 * 109.69750 * 190.27779 * 12 11 9 25 25 H 0.96705 * 114.00126 * 270.02908 * 17 16 15 26 26 H 1.08999 * 109.70563 * 256.48811 * 19 18 13 27 27 H 1.08999 * 109.74229 * 135.88015 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6251 -2.5571 -0.8898 11 6 2.2462 -3.6627 0.0018 12 6 1.5014 -4.9814 -0.2444 13 6 0.3347 -5.0502 0.7051 14 8 -0.4030 -6.0978 1.0706 15 7 -1.2663 -5.7780 1.8625 16 6 -1.2247 -4.4948 2.1294 17 8 -2.0395 -3.8063 2.9682 18 6 -0.1616 -3.9790 1.3666 19 6 0.3668 -2.5790 1.2532 20 1 -0.4850 0.8400 0.0004 21 1 2.7516 -3.7065 0.9665 22 1 2.9835 -3.5101 -0.7863 23 1 1.1407 -5.0130 -1.2726 24 1 2.1722 -5.8213 -0.0640 25 1 -2.8316 -3.4501 2.5429 26 1 0.9577 -2.3365 2.1364 27 1 -0.4633 -1.8784 1.1625 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259753694.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:12 Heat of formation + Delta-G solvation = -14.214755 kcal Electronic energy + Delta-G solvation = -13799.903621 eV Core-core repulsion = 11332.045497 eV Total energy + Delta-G solvation = -2467.858123 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.93452 -39.06325 -38.43112 -34.71827 -33.60817 -31.72654 -30.81172 -27.31952 -24.66901 -23.44376 -23.08694 -20.53629 -19.45074 -18.72370 -18.14484 -17.52813 -16.48847 -16.04833 -15.35859 -14.74353 -14.61607 -14.40074 -14.00265 -13.42701 -13.18520 -13.10339 -12.74994 -12.41169 -12.25136 -11.75398 -11.42002 -10.97693 -10.91567 -10.74748 -10.46766 -9.90007 -8.09037 -6.20923 0.39356 1.08925 1.43294 1.46784 1.56624 2.04624 2.45780 2.49601 3.20322 3.64589 3.99583 4.22499 4.30507 4.35211 4.66274 4.76818 4.91870 4.96913 5.02289 5.25545 5.30087 5.50383 5.66286 5.93537 6.04320 6.36019 6.40454 6.91056 7.16612 7.48034 8.97052 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.044162 B = 0.010078 C = 0.008516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.871542 B = 2777.613214 C = 3287.189655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.043 3.957 10 H 0.006 0.994 11 C -0.104 4.104 12 C -0.027 4.027 13 C -0.018 4.018 14 O 0.116 5.884 15 N -0.407 5.407 16 C 0.197 3.803 17 O -0.458 6.458 18 C -0.226 4.226 19 C -0.020 4.020 20 H 0.260 0.740 21 H 0.054 0.946 22 H 0.084 0.916 23 H 0.107 0.893 24 H 0.121 0.879 25 H 0.418 0.582 26 H 0.040 0.960 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 -7.389 -0.478 7.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.024 3.976 10 H 0.024 0.976 11 C -0.142 4.142 12 C -0.064 4.064 13 C -0.082 4.082 14 O 0.051 5.949 15 N -0.124 5.124 16 C 0.000 4.000 17 O -0.266 6.266 18 C -0.231 4.231 19 C -0.058 4.058 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.103 0.897 23 H 0.125 0.875 24 H 0.140 0.860 25 H 0.278 0.722 26 H 0.059 0.941 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.559 -8.331 0.397 8.360 hybrid contribution -0.234 2.119 -0.100 2.134 sum 0.324 -6.213 0.297 6.228 Atomic orbital electron populations 1.70023 1.07198 1.27069 1.51488 1.25737 0.95607 1.02396 0.94822 0.85598 0.79360 0.79958 0.77291 1.18814 1.20866 1.21192 1.21600 0.93387 0.91623 1.50227 0.92072 1.18791 0.93034 0.93321 0.92443 0.97626 1.21662 0.98094 0.92406 1.02015 1.20492 0.89845 1.00328 0.95783 1.24520 0.97871 0.85236 1.00591 1.84691 1.33031 1.33469 1.43721 1.74324 1.11154 1.16068 1.10843 1.20998 0.95425 0.88275 0.95301 1.84710 1.38209 1.69557 1.34143 1.21583 0.99940 1.00314 1.01311 1.19849 0.99617 0.87310 0.99062 0.93113 0.92686 0.89748 0.87490 0.86045 0.72243 0.94109 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.18 11.47 21.45 0.25 -50.93 15 2 C 0.01 0.70 5.30 84.65 0.45 1.15 15 3 Si 0.95 42.02 29.54 68.60 2.03 44.05 15 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.29 -12.61 7.11 99.48 0.71 -11.90 15 7 C -0.53 -27.40 8.52 25.60 0.22 -27.18 15 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 15 9 C 0.04 1.98 2.09 -11.32 -0.02 1.96 15 10 H 0.01 0.28 8.12 -2.39 -0.02 0.27 15 11 C -0.10 -3.67 5.13 30.78 0.16 -3.51 15 12 C -0.03 -0.75 6.31 29.96 0.19 -0.57 15 13 C -0.02 -0.63 7.38 24.98 0.18 -0.45 15 14 O 0.12 4.04 11.19 78.28 0.88 4.91 15 15 N -0.41 -15.45 12.13 -171.58 -2.08 -17.53 15 16 C 0.20 7.78 8.61 85.38 0.74 8.52 15 17 O -0.46 -16.28 13.65 -90.27 -1.23 -17.51 15 18 C -0.23 -9.30 6.09 -20.15 -0.12 -9.43 15 19 C -0.02 -0.95 5.18 29.83 0.15 -0.79 15 20 H 0.26 13.85 8.31 -92.71 -0.77 13.08 15 21 H 0.05 1.94 8.12 -2.39 -0.02 1.92 15 22 H 0.08 2.72 8.11 -2.39 -0.02 2.70 15 23 H 0.11 2.67 8.14 -2.38 -0.02 2.65 15 24 H 0.12 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.42 10.58 9.06 -74.05 -0.67 9.90 15 26 H 0.04 2.01 8.11 -2.39 -0.02 1.99 15 27 H 0.07 3.65 6.47 -2.39 -0.02 3.63 15 Total: -1.00 -61.97 234.24 2.30 -59.66 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.52 Total: 7.64 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 1.94 Total: -30.30 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -1.83 Total: -68.46 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.36 Total: -12.60 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -61.97 2.30 -59.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259753694.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.449 kcal (2) G-P(sol) polarization free energy of solvation -61.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds