Wall clock time and date at job start Thu Apr 9 2020 14:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47390 * 111.00233 * 2 1 4 4 C 1.53170 * 109.70137 * 285.36052 * 3 2 1 5 5 O 1.43711 * 109.21992 * 295.42923 * 4 3 2 6 6 C 1.35892 * 114.05078 * 45.75930 * 5 4 3 7 7 O 1.33713 * 128.91952 * 164.93668 * 6 5 4 8 8 C 1.35440 * 109.41061 * 180.31907 * 7 6 5 9 9 C 1.39615 * 125.90531 * 179.87157 * 8 7 6 10 10 H 1.07999 * 120.00317 * 180.02562 * 9 8 7 11 11 C 1.39875 * 119.99595 * 0.02562 * 9 8 7 12 12 N 1.31016 * 120.00149 * 359.72511 * 11 9 8 13 13 Si 1.86809 * 119.99993 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46828 * 60.00100 * 13 11 9 15 15 H 1.48497 * 109.46887 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46717 * 300.00102 * 13 11 9 17 17 C 1.39864 * 108.19868 * 0.13293 * 8 7 6 18 18 C 1.38785 * 106.53279 * 359.64276 * 17 8 7 19 19 H 1.08999 * 109.47343 * 59.99404 * 1 2 3 20 20 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47080 * 299.99656 * 1 2 3 22 22 H 1.08993 * 109.42950 * 165.28997 * 3 2 1 23 23 H 1.09000 * 109.38861 * 45.40779 * 3 2 1 24 24 H 1.08997 * 109.51447 * 175.50736 * 4 3 2 25 25 H 1.08996 * 109.51307 * 55.34867 * 4 3 2 26 26 H 0.97000 * 120.00289 * 180.02562 * 12 11 9 27 27 H 1.07995 * 126.73348 * 179.76125 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3760 0.0000 4 6 1.8257 1.9949 -1.3905 5 8 2.6308 1.2691 -2.3341 6 6 2.5313 -0.0817 -2.2234 7 8 2.9135 -1.0259 -3.0895 8 6 2.6207 -2.2471 -2.5823 9 6 2.8703 -3.4727 -3.2026 10 1 2.5958 -4.3935 -2.7094 11 6 3.4759 -3.5080 -4.4630 12 7 3.8040 -2.3908 -5.0637 13 14 3.8092 -5.1478 -5.2935 14 1 2.5280 -5.8722 -5.4907 15 1 4.4527 -4.9135 -6.6112 16 1 4.7114 -5.9610 -4.4390 17 6 2.0197 -2.0682 -1.3321 18 6 1.9722 -0.6992 -1.1090 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0553 1.3581 0.2610 23 1 1.4531 1.9725 0.7322 24 1 2.1435 3.0373 -1.3668 25 1 0.7783 1.9394 -1.6871 26 1 4.2236 -2.4153 -5.9379 27 1 1.6642 -2.8433 -0.6694 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768042.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:13 Heat of formation + Delta-G solvation = -16.442295 kcal Electronic energy + Delta-G solvation = -13872.497830 eV Core-core repulsion = 11404.543113 eV Total energy + Delta-G solvation = -2467.954717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76721 -38.46361 -35.50485 -33.59085 -30.71394 -29.36563 -28.01646 -25.62220 -23.46357 -22.74411 -20.03174 -18.91476 -17.35974 -16.83621 -15.43652 -15.11851 -15.03610 -14.36477 -14.13809 -13.66374 -13.19386 -12.87705 -12.07116 -11.93172 -11.47970 -11.32686 -11.19084 -11.07319 -10.81609 -10.68945 -10.38275 -10.02663 -9.41633 -8.67330 -7.54244 -6.83478 -6.73358 -4.31206 2.91050 3.04477 3.07762 3.26610 3.53055 3.87949 3.92164 4.48470 5.10103 5.18700 5.34177 5.40591 5.54582 5.69528 5.86884 5.99463 6.13289 6.18869 6.34774 7.04302 7.08241 7.12244 7.41912 7.64115 7.93157 7.99177 8.47689 8.63328 8.66269 9.15896 10.15995 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.062700 B = 0.009267 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.464279 B = 3020.638743 C = 3357.342280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.457 5.457 3 C 0.016 3.984 4 C 0.036 3.964 5 O -0.284 6.284 6 C -0.004 4.004 7 O -0.131 6.131 8 C 0.209 3.791 9 C -0.439 4.439 10 H 0.108 0.892 11 C 0.064 3.936 12 N -0.781 5.781 13 Si 0.925 3.075 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.262 1.262 17 C -0.356 4.356 18 C -0.022 4.022 19 H 0.024 0.976 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.054 0.946 26 H 0.285 0.715 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 3.714 4.255 6.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.176 5.176 3 C -0.113 4.113 4 C -0.042 4.042 5 O -0.201 6.201 6 C -0.098 4.098 7 O -0.028 6.028 8 C 0.157 3.843 9 C -0.469 4.469 10 H 0.126 0.874 11 C -0.156 4.156 12 N -0.407 5.407 13 Si 0.749 3.251 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.186 1.186 17 C -0.378 4.378 18 C -0.118 4.118 19 H 0.042 0.958 20 H 0.091 0.909 21 H 0.080 0.920 22 H 0.105 0.895 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.082 3.770 4.118 6.377 hybrid contribution -0.273 -0.134 -0.871 0.923 sum -3.355 3.636 3.247 5.917 Atomic orbital electron populations 1.22474 0.87533 1.02522 0.99433 1.60102 1.07182 1.11268 1.39056 1.22898 1.02431 0.89790 0.96133 1.23316 0.94954 0.95479 0.90420 1.86194 1.64142 1.12368 1.57366 1.19479 1.17524 0.81772 0.91015 1.84250 1.66430 1.13237 1.38868 1.19450 0.92651 0.81889 0.90337 1.18607 1.36326 0.90653 1.01335 0.87426 1.26120 0.93509 0.98858 0.97148 1.69858 1.28541 1.28235 1.14099 0.86073 0.79653 0.80941 0.78412 1.18701 1.20183 1.18643 1.20306 1.23618 0.92724 1.01182 1.18684 1.09707 0.93826 0.89618 0.95785 0.90946 0.91996 0.89497 0.89733 0.87757 0.92774 0.90399 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.34 60.06 0.56 1.03 15 2 N -0.46 -9.39 5.20 -178.18 -0.93 -10.32 15 3 C 0.02 0.27 5.93 -3.47 -0.02 0.25 15 4 C 0.04 0.63 6.94 37.25 0.26 0.89 15 5 O -0.28 -6.85 10.72 -42.23 -0.45 -7.31 15 6 C 0.00 -0.12 8.33 31.06 0.26 0.14 15 7 O -0.13 -3.94 8.92 -18.82 -0.17 -4.11 15 8 C 0.21 6.00 6.79 -38.46 -0.26 5.74 15 9 C -0.44 -11.91 9.29 -38.46 -0.36 -12.26 15 10 H 0.11 2.67 7.84 -52.49 -0.41 2.26 15 11 C 0.06 1.64 5.50 -17.29 -0.09 1.54 15 12 N -0.78 -21.43 11.98 55.55 0.67 -20.77 15 13 Si 0.93 18.67 29.56 -169.99 -5.03 13.64 15 14 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 15 H -0.28 -5.45 7.11 56.52 0.40 -5.05 15 16 H -0.26 -5.16 7.11 56.52 0.40 -4.75 15 17 C -0.36 -9.49 10.91 -38.77 -0.42 -9.92 15 18 C -0.02 -0.55 5.47 -83.38 -0.46 -1.00 15 19 H 0.02 0.41 6.78 -51.93 -0.35 0.06 15 20 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 21 H 0.06 0.84 8.10 -51.93 -0.42 0.42 15 22 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 23 H 0.08 1.10 7.99 -51.93 -0.41 0.68 15 24 H 0.10 1.40 8.14 -51.93 -0.42 0.98 15 25 H 0.05 0.92 6.77 -51.93 -0.35 0.57 15 26 H 0.29 7.06 8.30 -40.82 -0.34 6.72 15 27 H 0.12 2.99 8.06 -52.49 -0.42 2.57 15 LS Contribution 234.44 15.07 3.53 3.53 Total: -1.00 -31.59 234.44 -5.68 -37.28 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -2.78 Total: 1.64 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.53 Total: -13.60 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: -0.26 Total: -31.08 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.62 Total: -11.41 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.59 -5.68 -37.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768042.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.835 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds