Wall clock time and date at job start Thu Apr 9 2020 14:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47390 * 111.00233 * 2 1 4 4 C 1.53170 * 109.70137 * 285.36052 * 3 2 1 5 5 O 1.43711 * 109.21992 * 295.42923 * 4 3 2 6 6 C 1.35892 * 114.05078 * 45.75930 * 5 4 3 7 7 O 1.33713 * 128.91952 * 164.93668 * 6 5 4 8 8 C 1.35440 * 109.41061 * 180.31907 * 7 6 5 9 9 C 1.39615 * 125.90531 * 179.87157 * 8 7 6 10 10 H 1.07999 * 120.00317 * 180.02562 * 9 8 7 11 11 C 1.39875 * 119.99595 * 0.02562 * 9 8 7 12 12 N 1.31016 * 120.00149 * 359.72511 * 11 9 8 13 13 Si 1.86809 * 119.99993 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46828 * 60.00100 * 13 11 9 15 15 H 1.48497 * 109.46887 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46717 * 300.00102 * 13 11 9 17 17 C 1.39864 * 108.19868 * 0.13293 * 8 7 6 18 18 C 1.38785 * 106.53279 * 359.64276 * 17 8 7 19 19 H 1.08999 * 109.47343 * 59.99404 * 1 2 3 20 20 H 1.08997 * 109.47282 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47080 * 299.99656 * 1 2 3 22 22 H 1.08993 * 109.42950 * 165.28997 * 3 2 1 23 23 H 1.09000 * 109.38861 * 45.40779 * 3 2 1 24 24 H 1.08997 * 109.51447 * 175.50736 * 4 3 2 25 25 H 1.08996 * 109.51307 * 55.34867 * 4 3 2 26 26 H 0.97000 * 120.00289 * 180.02562 * 12 11 9 27 27 H 1.07995 * 126.73348 * 179.76125 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3760 0.0000 4 6 1.8257 1.9949 -1.3905 5 8 2.6308 1.2691 -2.3341 6 6 2.5313 -0.0817 -2.2234 7 8 2.9135 -1.0259 -3.0895 8 6 2.6207 -2.2471 -2.5823 9 6 2.8703 -3.4727 -3.2026 10 1 2.5958 -4.3935 -2.7094 11 6 3.4759 -3.5080 -4.4630 12 7 3.8040 -2.3908 -5.0637 13 14 3.8092 -5.1478 -5.2935 14 1 2.5280 -5.8722 -5.4907 15 1 4.4527 -4.9135 -6.6112 16 1 4.7114 -5.9610 -4.4390 17 6 2.0197 -2.0682 -1.3321 18 6 1.9722 -0.6992 -1.1090 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0553 1.3581 0.2610 23 1 1.4531 1.9725 0.7322 24 1 2.1435 3.0373 -1.3668 25 1 0.7783 1.9394 -1.6871 26 1 4.2236 -2.4153 -5.9379 27 1 1.6642 -2.8433 -0.6694 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768042.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:13 Heat of formation + Delta-G solvation = -39.052558 kcal Electronic energy + Delta-G solvation = -13873.478285 eV Core-core repulsion = 11404.543113 eV Total energy + Delta-G solvation = -2468.935171 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.72058 -40.20896 -37.16729 -35.58293 -32.66098 -31.08541 -29.71764 -27.30983 -25.26068 -24.35269 -22.03853 -20.77203 -19.19697 -18.66833 -17.14723 -16.92628 -16.86044 -16.18722 -15.74564 -15.14516 -14.91653 -14.51285 -13.81842 -13.53487 -13.10837 -13.02346 -12.97189 -12.70445 -12.51481 -12.33015 -11.93821 -11.78219 -11.27378 -10.51150 -9.39351 -8.77766 -8.66864 -6.37556 1.11992 1.39137 1.50956 1.55837 1.69866 2.00818 2.18282 2.94517 3.15725 3.71165 3.83199 4.06447 4.14019 4.24777 4.48622 4.50801 4.68830 4.82506 4.93617 5.07667 5.12614 5.30519 5.48354 5.89661 6.08786 6.11917 6.51932 6.61096 6.73734 7.11142 8.24784 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.062700 B = 0.009267 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.464279 B = 3020.638743 C = 3357.342280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.469 5.469 3 C 0.015 3.985 4 C 0.027 3.973 5 O -0.309 6.309 6 C -0.039 4.039 7 O -0.168 6.168 8 C 0.175 3.825 9 C -0.468 4.468 10 H 0.123 0.877 11 C 0.016 3.984 12 N -0.825 5.825 13 Si 1.012 2.988 14 H -0.250 1.250 15 H -0.269 1.269 16 H -0.251 1.251 17 C -0.375 4.375 18 C -0.009 4.009 19 H 0.021 0.979 20 H 0.061 0.939 21 H 0.107 0.893 22 H 0.076 0.924 23 H 0.137 0.863 24 H 0.150 0.850 25 H 0.060 0.940 26 H 0.293 0.707 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 3.740 5.073 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.189 5.189 3 C -0.112 4.112 4 C -0.049 4.049 5 O -0.227 6.227 6 C -0.132 4.132 7 O -0.067 6.067 8 C 0.123 3.877 9 C -0.497 4.497 10 H 0.141 0.859 11 C -0.200 4.200 12 N -0.452 5.452 13 Si 0.830 3.170 14 H -0.174 1.174 15 H -0.193 1.193 16 H -0.174 1.174 17 C -0.397 4.397 18 C -0.106 4.106 19 H 0.040 0.960 20 H 0.079 0.921 21 H 0.126 0.874 22 H 0.095 0.905 23 H 0.155 0.845 24 H 0.168 0.832 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.771 3.829 4.972 7.321 hybrid contribution -0.107 -0.012 -1.026 1.032 sum -3.878 3.817 3.946 6.721 Atomic orbital electron populations 1.22555 0.85108 1.02623 1.01498 1.60097 1.09214 1.13149 1.36445 1.23080 1.02659 0.88427 0.97070 1.23829 0.94858 0.96834 0.89387 1.86145 1.65951 1.10964 1.59605 1.19994 1.18800 0.82865 0.91569 1.84154 1.67575 1.14307 1.40624 1.20063 0.93762 0.82309 0.91556 1.19145 1.37089 0.90823 1.02612 0.85940 1.27298 0.92144 1.03386 0.97138 1.69971 1.29129 1.31247 1.14864 0.84809 0.80046 0.74985 0.77206 1.17398 1.19296 1.17448 1.20550 1.24071 0.94076 1.01002 1.18861 1.08168 0.93412 0.90136 0.96005 0.92051 0.87432 0.90510 0.84464 0.83223 0.92160 0.89622 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.34 127.69 1.19 2.08 15 2 N -0.47 -18.47 5.20 -717.64 -3.73 -22.20 15 3 C 0.02 0.47 5.93 86.27 0.51 0.98 15 4 C 0.03 0.88 6.94 72.04 0.50 1.37 15 5 O -0.31 -15.05 10.72 -70.51 -0.76 -15.81 15 6 C -0.04 -2.21 8.33 68.03 0.57 -1.64 15 7 O -0.17 -10.61 8.92 13.26 0.12 -10.50 15 8 C 0.17 10.45 6.79 23.00 0.16 10.60 15 9 C -0.47 -26.02 9.29 23.00 0.21 -25.80 15 10 H 0.12 6.16 7.84 -2.91 -0.02 6.14 15 11 C 0.02 0.84 5.50 85.21 0.47 1.30 15 12 N -0.83 -46.61 11.98 21.83 0.26 -46.35 15 13 Si 1.01 37.95 29.56 68.60 2.03 39.98 15 14 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 15 H -0.27 -9.61 7.11 99.48 0.71 -8.90 15 16 H -0.25 -8.90 7.11 99.48 0.71 -8.19 15 17 C -0.38 -20.54 10.91 22.79 0.25 -20.29 15 18 C -0.01 -0.44 5.47 38.11 0.21 -0.23 15 19 H 0.02 0.69 6.78 -2.39 -0.02 0.67 15 20 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.11 2.41 8.10 -2.39 -0.02 2.39 15 22 H 0.08 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.14 2.83 7.99 -2.39 -0.02 2.81 15 24 H 0.15 3.47 8.14 -2.39 -0.02 3.45 15 25 H 0.06 1.91 6.77 -2.39 -0.02 1.89 15 26 H 0.29 14.84 8.30 -92.71 -0.77 14.07 15 27 H 0.13 6.61 8.06 -2.91 -0.02 6.58 15 Total: -1.00 -72.32 234.44 3.16 -69.15 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.18 Total: 17.35 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 4.07 Total: -31.62 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -3.47 Total: -68.55 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.64 Total: -26.30 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -72.32 3.16 -69.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768042.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.102 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds