Wall clock time and date at job start Thu Apr 9 2020 14:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99699 * 2 1 4 4 H 1.48503 * 109.47121 * 270.00177 * 3 2 1 5 5 H 1.48499 * 109.47191 * 30.00182 * 3 2 1 6 6 H 1.48496 * 109.47095 * 150.00036 * 3 2 1 7 7 C 1.37875 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99675 * 185.49927 * 7 2 1 9 9 C 1.50695 * 120.00315 * 5.49685 * 7 2 1 10 10 H 1.09006 * 109.70578 * 334.48509 * 9 7 2 11 11 C 1.53544 * 109.71215 * 95.07179 * 9 7 2 12 12 C 1.53102 * 109.51606 * 168.93846 * 11 9 7 13 13 C 1.53431 * 109.72381 * 290.16844 * 12 11 9 14 14 C 1.50579 * 108.31503 * 49.98685 * 13 12 11 15 15 O 1.33240 * 129.64120 * 163.16242 * 14 13 12 16 16 N 1.21437 * 111.43700 * 180.23859 * 15 14 13 17 17 C 1.31128 * 111.58474 * 359.94351 * 16 15 14 18 18 O 1.35715 * 127.09778 * 179.97438 * 17 16 15 19 19 C 1.35337 * 123.79429 * 343.32396 * 14 13 12 20 20 H 0.97006 * 120.00322 * 354.98130 * 1 2 3 21 21 H 1.08997 * 109.46177 * 48.92298 * 11 9 7 22 22 H 1.08998 * 109.45532 * 288.94549 * 11 9 7 23 23 H 1.09008 * 109.43185 * 50.24119 * 12 11 9 24 24 H 1.09002 * 109.43215 * 170.08364 * 12 11 9 25 25 H 1.08993 * 109.70085 * 169.70039 * 13 12 11 26 26 H 1.09011 * 109.69124 * 290.28512 * 13 12 11 27 27 H 0.96691 * 114.00417 * 275.08004 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0808 -1.1961 0.0891 9 6 1.2563 -2.4961 -0.1261 10 1 0.2369 -2.3709 0.2391 11 6 1.2290 -2.9380 -1.5963 12 6 0.7183 -4.3784 -1.6881 13 6 1.7670 -5.3375 -1.1097 14 6 2.1854 -4.8220 0.2418 15 8 2.8222 -5.4482 1.2305 16 7 2.9905 -4.7155 2.1843 17 6 2.4985 -3.5197 1.9666 18 8 2.5129 -2.4615 2.8162 19 6 1.9525 -3.5599 0.6712 20 1 -0.4851 0.8368 0.0735 21 1 2.2355 -2.8824 -2.0110 22 1 0.5669 -2.2813 -2.1606 23 1 -0.2089 -4.4711 -1.1224 24 1 0.5320 -4.6313 -2.7319 25 1 1.3365 -6.3334 -1.0060 26 1 2.6324 -5.3779 -1.7715 27 1 1.7819 -2.4552 3.4491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799638.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:18 Heat of formation + Delta-G solvation = -14.137635 kcal Electronic energy + Delta-G solvation = -13988.794797 eV Core-core repulsion = 11520.940018 eV Total energy + Delta-G solvation = -2467.854779 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.80283 -38.94943 -38.25593 -34.84314 -33.40126 -31.61469 -31.08180 -26.98602 -24.80410 -23.41289 -22.90993 -20.57691 -19.07562 -18.90408 -18.08914 -17.54403 -16.48205 -15.86929 -15.43231 -14.72902 -14.49879 -14.36946 -14.24018 -13.33094 -13.20274 -12.92809 -12.79757 -12.29594 -12.02967 -11.65644 -11.45637 -11.26581 -10.97074 -10.66539 -10.51676 -9.79778 -8.13523 -6.21061 0.51572 1.27270 1.37884 1.40183 1.50304 2.19771 2.42979 2.67076 3.15014 3.79558 4.12915 4.26681 4.35726 4.39528 4.59287 4.77806 4.90424 4.95735 5.06805 5.21999 5.39141 5.50204 5.60424 5.82637 5.85325 6.31655 6.60229 6.87755 7.31127 7.43889 8.93606 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.033829 B = 0.013024 C = 0.010258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.497875 B = 2149.396097 C = 2729.034126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.023 3.977 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.504 4.504 8 H 0.033 0.967 9 C 0.102 3.898 10 H 0.040 0.960 11 C -0.105 4.105 12 C -0.112 4.112 13 C -0.021 4.021 14 C -0.043 4.043 15 O 0.114 5.886 16 N -0.418 5.418 17 C 0.201 3.799 18 O -0.454 6.454 19 C -0.201 4.201 20 H 0.263 0.737 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -9.235 -2.550 9.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.542 4.542 8 H 0.051 0.949 9 C 0.083 3.917 10 H 0.058 0.942 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.059 4.059 14 C -0.107 4.107 15 O 0.048 5.952 16 N -0.136 5.136 17 C 0.004 3.996 18 O -0.260 6.260 19 C -0.207 4.207 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.122 0.878 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.392 -9.406 -1.848 9.686 hybrid contribution -0.321 1.886 0.411 1.957 sum 1.070 -7.520 -1.437 7.731 Atomic orbital electron populations 1.69976 1.06842 1.27612 1.51819 1.25535 0.95565 1.01829 0.94645 0.85747 0.78558 0.80100 0.78354 1.19678 1.20567 1.20579 1.21043 0.92378 0.91434 1.49338 0.94891 1.17298 0.94713 0.88793 0.90930 0.94173 1.21699 0.99769 0.95759 0.97082 1.21679 0.97501 0.93411 1.02349 1.20414 1.00315 1.00525 0.84630 1.24626 0.98908 0.92085 0.95103 1.84636 1.57689 1.34438 1.18464 1.74304 1.24982 1.04323 1.09975 1.21069 0.99703 0.86719 0.92071 1.84805 1.53318 1.38837 1.49007 1.21804 1.05215 0.97663 0.95975 0.92769 0.93414 0.93782 0.92301 0.87816 0.86031 0.87246 0.73391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.79 12.78 21.45 0.27 -52.51 15 2 C 0.02 1.27 5.45 84.65 0.46 1.73 15 3 Si 0.95 44.57 29.54 68.60 2.03 46.59 15 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 6 H -0.28 -13.41 7.11 99.48 0.71 -12.70 15 7 C -0.50 -28.01 7.83 25.60 0.20 -27.81 15 8 H 0.03 1.93 7.82 -2.91 -0.02 1.91 15 9 C 0.10 4.99 2.63 -12.30 -0.03 4.96 15 10 H 0.04 2.22 7.27 -2.38 -0.02 2.20 15 11 C -0.10 -4.25 5.23 30.81 0.16 -4.09 15 12 C -0.11 -3.19 5.88 30.77 0.18 -3.01 15 13 C -0.02 -0.53 6.31 29.95 0.19 -0.34 15 14 C -0.04 -1.54 7.38 24.98 0.18 -1.35 15 15 O 0.11 4.18 11.19 78.25 0.88 5.06 15 16 N -0.42 -17.40 12.13 -171.57 -2.08 -19.48 15 17 C 0.20 9.03 8.39 85.38 0.72 9.75 15 18 O -0.45 -19.97 13.35 -90.36 -1.21 -21.18 15 19 C -0.20 -8.94 5.51 -20.15 -0.11 -9.05 15 20 H 0.26 14.33 8.32 -92.70 -0.77 13.56 15 21 H 0.05 1.92 8.08 -2.39 -0.02 1.90 15 22 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.06 1.75 8.12 -2.38 -0.02 1.73 15 24 H 0.10 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.12 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.11 2.29 8.14 -2.38 -0.02 2.27 15 27 H 0.41 13.67 9.06 -74.06 -0.67 13.00 15 Total: -1.00 -66.74 236.15 2.36 -64.38 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.52 Total: 6.37 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 1.95 Total: -29.22 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -1.81 Total: -72.00 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.33 Total: -16.12 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.74 2.36 -64.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799638.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.243 kcal (2) G-P(sol) polarization free energy of solvation -66.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds