Wall clock time and date at job start Thu Apr 9 2020 14:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35349 * 127.24792 * 2 1 4 4 N 1.35045 * 107.24461 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.88392 * 180.02562 * 4 3 2 6 6 N 1.28467 * 110.23805 * 359.97438 * 4 3 2 7 7 C 1.31870 * 110.06474 * 359.74852 * 6 4 3 8 8 C 1.47604 * 126.52363 * 180.25853 * 7 6 4 9 9 O 1.21612 * 119.99462 * 180.14853 * 8 7 6 10 10 N 1.34777 * 120.00329 * 0.15455 * 8 7 6 11 11 C 1.36906 * 119.99676 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00547 * 0.02562 * 11 10 8 13 13 C 1.39031 * 119.99593 * 179.97438 * 11 10 8 14 14 N 1.31376 * 119.99990 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99742 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47370 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47140 * 120.00507 * 15 13 11 18 18 H 1.48498 * 109.47027 * 240.00255 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.02748 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02848 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02829 * 1 2 3 22 22 H 1.08001 * 126.37908 * 359.92084 * 3 2 1 23 23 H 1.08999 * 109.47468 * 89.99885 * 5 4 3 24 24 H 1.09005 * 109.47440 * 210.00249 * 5 4 3 25 25 H 1.08999 * 109.46797 * 329.99380 * 5 4 3 26 26 H 0.96993 * 119.99813 * 359.97438 * 10 8 7 27 27 H 0.97002 * 119.99777 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.0774 0.0000 4 7 3.5952 0.6155 0.0006 5 6 4.7936 1.4581 0.0013 6 7 3.6005 -0.6692 0.0015 7 6 2.3637 -1.1267 0.0070 8 6 1.9513 -2.5439 0.0151 9 8 0.7702 -2.8334 0.0168 10 7 2.8837 -3.5171 0.0206 11 6 2.5011 -4.8316 0.0286 12 1 1.4522 -5.0887 0.0301 13 6 3.4629 -5.8355 0.0337 14 7 4.7389 -5.5227 0.0314 15 14 2.9409 -7.6290 0.0440 16 1 1.4583 -7.7131 0.0445 17 1 3.4743 -8.3067 -1.1650 18 1 3.4752 -8.2931 1.2600 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 0.8903 0.5134 21 1 -0.3633 -0.8898 0.5143 22 1 2.0218 2.1136 -0.0012 23 1 5.0903 1.6670 1.0291 24 1 5.6030 0.9392 -0.5122 25 1 4.5791 2.3951 -0.5126 26 1 3.8258 -3.2862 0.0188 27 1 5.4100 -6.2231 0.0354 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259725692.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:55 Heat of formation + Delta-G solvation = 11.216941 kcal Electronic energy + Delta-G solvation = -13310.520389 eV Core-core repulsion = 10876.057818 eV Total energy + Delta-G solvation = -2434.462571 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.44757 -39.82161 -36.10027 -34.64393 -33.52585 -32.51092 -29.04558 -27.98383 -26.42565 -23.38055 -21.49868 -20.76073 -19.90502 -18.18938 -17.22926 -17.12939 -16.55356 -15.79458 -15.28174 -14.91553 -14.31625 -14.09896 -14.02346 -13.52384 -13.25837 -13.18701 -12.94206 -12.87213 -12.46127 -12.09307 -11.59040 -11.57351 -10.54816 -10.14670 -10.02906 -9.56576 -8.52264 -5.99757 0.75233 1.27059 1.40766 1.46556 1.57567 1.81140 2.28855 2.51853 3.18653 3.28442 3.64307 4.01819 4.33996 4.44251 4.47964 4.60635 4.71438 4.74636 4.96436 5.13463 5.31450 5.35204 5.64263 5.95302 6.10296 6.50682 6.99027 7.09001 7.49359 8.01627 8.65999 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.045139 B = 0.008442 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.153768 B = 3315.904745 C = 3915.608627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.186 4.186 3 C -0.002 4.002 4 N -0.287 5.287 5 C 0.078 3.922 6 N -0.302 5.302 7 C -0.030 4.030 8 C 0.508 3.492 9 O -0.620 6.620 10 N -0.551 5.551 11 C -0.339 4.339 12 H 0.088 0.912 13 C -0.014 4.014 14 N -0.917 5.917 15 Si 1.005 2.995 16 H -0.268 1.268 17 H -0.267 1.267 18 H -0.267 1.267 19 H 0.063 0.937 20 H 0.094 0.906 21 H 0.046 0.954 22 H 0.234 0.766 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.397 0.603 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 15.005 -0.082 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.197 4.197 3 C -0.146 4.146 4 N -0.075 5.075 5 C -0.060 4.060 6 N -0.139 5.139 7 C -0.189 4.189 8 C 0.295 3.705 9 O -0.507 6.507 10 N -0.186 5.186 11 C -0.468 4.468 12 H 0.106 0.894 13 C -0.215 4.215 14 N -0.557 5.557 15 Si 0.827 3.173 16 H -0.192 1.192 17 H -0.192 1.192 18 H -0.192 1.192 19 H 0.082 0.918 20 H 0.113 0.887 21 H 0.065 0.935 22 H 0.250 0.750 23 H 0.117 0.883 24 H 0.109 0.891 25 H 0.153 0.847 26 H 0.231 0.769 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.541 14.434 -0.084 14.516 hybrid contribution -0.253 -0.719 0.003 0.763 sum 1.288 13.715 -0.081 13.775 Atomic orbital electron populations 1.20054 0.87756 1.02609 1.02032 1.20749 0.98387 0.90653 1.09867 1.23193 0.82715 1.01382 1.07282 1.45819 1.08803 1.02970 1.49880 1.22577 0.83332 0.94181 1.05880 1.73554 1.23160 0.95703 1.21519 1.22030 0.90640 0.95033 1.11159 1.17196 0.85577 0.83656 0.84105 1.90521 1.17995 1.83275 1.58877 1.41873 1.08683 1.05535 1.62484 1.19905 0.94736 0.82020 1.50155 0.89392 1.26307 0.94513 1.05079 0.95551 1.69724 1.00794 1.36238 1.48949 0.84706 0.78560 0.75469 0.78533 1.19218 1.19243 1.19233 0.91823 0.88725 0.93512 0.75001 0.88300 0.89100 0.84672 0.76901 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.20 9.93 71.24 0.71 -1.49 15 2 C -0.19 -6.86 6.25 -19.72 -0.12 -6.98 15 3 C 0.00 -0.05 11.40 83.53 0.95 0.90 15 4 N -0.29 -8.33 3.70 -369.46 -1.37 -9.69 15 5 C 0.08 1.21 11.31 127.77 1.44 2.65 15 6 N -0.30 -12.60 11.67 -48.20 -0.56 -13.16 15 7 C -0.03 -1.42 7.13 42.43 0.30 -1.11 15 8 C 0.51 28.94 7.77 86.72 0.67 29.61 15 9 O -0.62 -37.93 14.68 -4.07 -0.06 -37.99 15 10 N -0.55 -32.77 5.28 -309.82 -1.63 -34.40 15 11 C -0.34 -20.74 9.68 84.09 0.81 -19.92 15 12 H 0.09 5.59 7.15 -2.91 -0.02 5.57 15 13 C -0.01 -0.80 5.50 84.95 0.47 -0.33 15 14 N -0.92 -52.80 13.05 21.68 0.28 -52.51 15 15 Si 1.01 44.40 29.55 68.60 2.03 46.43 15 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 18 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 19 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 20 H 0.09 2.21 8.14 -2.39 -0.02 2.20 15 21 H 0.05 1.88 6.70 -2.38 -0.02 1.87 15 22 H 0.23 3.08 8.06 -2.91 -0.02 3.06 15 23 H 0.10 1.20 8.14 -2.39 -0.02 1.18 15 24 H 0.09 1.50 8.14 -2.38 -0.02 1.48 15 25 H 0.14 0.89 8.13 -2.39 -0.02 0.87 15 26 H 0.40 23.39 7.62 -92.71 -0.71 22.69 15 27 H 0.28 14.84 8.31 -92.71 -0.77 14.07 15 Total: -1.00 -79.55 246.76 4.41 -75.13 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.49 Total: 22.89 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.24 Total: 3.32 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -3.28 Total: -109.77 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.06 Total: -37.99 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -79.55 4.41 -75.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725692.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.350 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds