Wall clock time and date at job start Thu Apr 9 2020 14:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48497 * 109.47256 * 270.00468 * 3 2 1 5 5 H 1.48501 * 109.46648 * 30.00221 * 3 2 1 6 6 H 1.48499 * 109.47064 * 149.99637 * 3 2 1 7 7 C 1.37878 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00032 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00473 * 179.97438 * 7 2 1 10 10 H 1.08996 * 112.96542 * 307.82604 * 9 7 2 11 11 C 1.53948 * 113.77120 * 79.49918 * 9 7 2 12 12 C 1.53946 * 86.28931 * 90.69617 * 11 9 7 13 13 N 1.47580 * 86.24073 * 23.55342 * 12 11 9 14 14 C 1.34775 * 134.49629 * 155.42618 * 13 12 11 15 15 O 1.21281 * 120.00557 * 180.02562 * 14 13 12 16 16 C 1.50704 * 119.99699 * 359.97438 * 14 13 12 17 17 C 1.53785 * 113.61131 * 277.49880 * 16 14 13 18 18 C 1.53783 * 87.07646 * 220.01986 * 17 16 14 19 19 C 1.53779 * 87.08517 * 25.43552 * 18 17 16 20 20 H 0.96994 * 120.00185 * 359.97438 * 1 2 3 21 21 H 1.09002 * 113.74016 * 336.35687 * 11 9 7 22 22 H 1.08997 * 113.84051 * 205.05874 * 11 9 7 23 23 H 1.09002 * 113.76900 * 137.91044 * 12 11 9 24 24 H 1.09000 * 113.76969 * 269.19466 * 12 11 9 25 25 H 1.08995 * 112.84938 * 48.80082 * 16 14 13 26 26 H 1.08995 * 113.61384 * 334.56423 * 17 16 14 27 27 H 1.08997 * 113.61582 * 105.47336 * 17 16 14 28 28 H 1.09001 * 113.61551 * 270.87939 * 18 17 16 29 29 H 1.09001 * 113.61273 * 139.98741 * 18 17 16 30 30 H 1.09000 * 113.61366 * 220.02045 * 19 18 17 31 31 H 1.08994 * 113.69366 * 89.12174 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.9365 -0.5785 -0.7938 11 6 4.1326 -0.9377 1.3840 12 6 4.1096 -2.4661 1.5666 13 7 4.1050 -2.5446 0.0928 14 6 4.4885 -3.4739 -0.8048 15 8 4.3632 -3.2587 -1.9918 16 6 5.0740 -4.7802 -0.3335 17 6 6.5732 -4.6987 -0.0006 18 6 6.7143 -6.0806 -0.6604 19 6 5.4603 -5.7309 -1.4789 20 1 -0.4850 0.8400 0.0004 21 1 3.4733 -0.4040 2.0686 22 1 5.1367 -0.5154 1.3452 23 1 5.0133 -2.8675 2.0251 24 1 3.1960 -2.8395 2.0293 25 1 4.4775 -5.2547 0.4456 26 1 7.0963 -3.9049 -0.5337 27 1 6.7838 -4.7019 1.0688 28 1 6.5676 -6.9112 0.0300 29 1 7.6151 -6.1857 -1.2651 30 1 4.7725 -6.5673 -1.6028 31 1 5.6778 -5.2192 -2.4164 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:06 Heat of formation + Delta-G solvation = 13.940676 kcal Electronic energy + Delta-G solvation = -13893.135197 eV Core-core repulsion = 11562.331079 eV Total energy + Delta-G solvation = -2330.804118 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81511 -38.10370 -36.18192 -32.50671 -29.45425 -27.02159 -26.02313 -25.47662 -23.12569 -21.34737 -19.37864 -18.04708 -16.87986 -16.47342 -15.42946 -15.28310 -14.92969 -13.99477 -13.41577 -13.14908 -12.66482 -12.34776 -12.16673 -11.85638 -11.56220 -11.21571 -11.04289 -10.90417 -10.81990 -10.41313 -10.25927 -10.04947 -9.93040 -9.55263 -8.83474 -8.65388 -7.68343 -6.19625 -4.22162 3.23141 3.31256 3.33166 3.34242 3.78283 4.32094 4.68364 4.76100 4.85367 4.96069 5.06621 5.33546 5.51709 5.67359 5.72345 5.81162 5.88500 5.89651 5.97945 6.07191 6.23808 6.33934 6.49958 6.57067 6.64806 6.75355 6.95224 7.56146 8.36392 8.68645 8.84319 8.99233 9.41154 10.92544 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.055043 B = 0.008549 C = 0.008184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.568908 B = 3274.483628 C = 3420.685336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.521 4.521 8 H 0.078 0.922 9 C 0.248 3.752 10 H 0.040 0.960 11 C -0.168 4.168 12 C 0.114 3.886 13 N -0.629 5.629 14 C 0.534 3.466 15 O -0.555 6.555 16 C -0.133 4.133 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.118 4.118 20 H 0.267 0.733 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -7.076 4.339 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.559 4.559 8 H 0.096 0.904 9 C 0.146 3.854 10 H 0.058 0.942 11 C -0.206 4.206 12 C -0.009 4.009 13 N -0.363 5.363 14 C 0.323 3.677 15 O -0.434 6.434 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.179 4.179 19 C -0.156 4.156 20 H 0.077 0.923 21 H 0.099 0.901 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.796 -6.983 3.569 14.165 hybrid contribution 0.135 0.834 0.110 0.852 sum 11.931 -6.149 3.679 13.918 Atomic orbital electron populations 1.69885 1.06298 1.27360 1.49109 1.24832 0.94717 0.99040 0.93821 0.86938 0.80848 0.83355 0.79068 1.20033 1.20979 1.17815 1.20916 0.87719 0.95108 1.52117 0.90363 1.20652 0.94505 0.77994 0.92202 0.94195 1.23879 1.00312 0.94819 1.01633 1.22955 1.00341 0.96390 0.81247 1.50432 1.60189 1.18810 1.06868 1.19973 0.78286 0.83916 0.85519 1.90629 1.57255 1.79050 1.16429 1.22712 0.97150 0.94982 1.00591 1.22768 0.94259 0.97972 1.00954 1.22831 0.98645 0.96973 0.99445 1.22785 0.96844 0.98151 0.97822 0.92264 0.90131 0.91591 0.92041 0.89912 0.87662 0.89910 0.91117 0.90180 0.91334 0.91361 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.87 20.67 26.81 -169.99 -4.56 16.11 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.25 -5.51 5.88 56.52 0.33 -5.18 16 7 C -0.52 -14.72 9.33 -34.44 -0.32 -15.04 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 9 C 0.25 6.02 3.38 -67.89 -0.23 5.79 16 10 H 0.04 1.02 7.30 -51.93 -0.38 0.65 16 11 C -0.17 -3.27 6.30 -25.79 -0.16 -3.44 16 12 C 0.11 2.01 8.33 -2.97 -0.02 1.98 16 13 N -0.63 -13.65 3.41 -171.49 -0.59 -14.23 16 14 C 0.53 11.44 7.58 -10.98 -0.08 11.36 16 15 O -0.55 -14.15 16.63 5.56 0.09 -14.05 16 16 C -0.13 -2.08 3.90 -90.95 -0.35 -2.43 16 17 C -0.12 -1.54 7.63 -25.92 -0.20 -1.73 16 18 C -0.14 -1.55 8.08 -25.92 -0.21 -1.76 16 19 C -0.12 -1.66 7.41 -25.92 -0.19 -1.85 16 20 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.08 1.58 7.60 -51.93 -0.39 1.18 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 26 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.49 7.43 -51.93 -0.39 1.10 16 LS Contribution 260.25 15.07 3.92 3.92 Total: -1.00 -32.52 260.25 -6.82 -39.34 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.59 Total: -0.15 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.87 Total: -4.96 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.19 Total: -40.21 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.56 Total: 16.11 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.52 -6.82 -39.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.281 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds