Wall clock time and date at job start Thu Apr 9 2020 14:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48495 * 109.47241 * 269.99827 * 3 2 1 5 5 H 1.48497 * 109.47029 * 29.99716 * 3 2 1 6 6 H 1.48501 * 109.47196 * 149.99661 * 3 2 1 7 7 C 1.37874 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00286 * 185.06532 * 7 2 1 9 9 C 1.50695 * 120.00330 * 5.06928 * 7 2 1 10 10 H 1.09004 * 109.46977 * 4.59826 * 9 7 2 11 11 C 1.53000 * 109.47457 * 124.59903 * 9 7 2 12 12 C 1.52995 * 117.49831 * 294.63280 * 11 9 7 13 13 C 1.53007 * 60.03097 * 252.51883 * 12 11 9 14 14 C 1.53002 * 109.47355 * 244.60196 * 9 7 2 15 15 H 1.09001 * 110.85687 * 296.20877 * 14 9 7 16 16 C 1.54478 * 110.96987 * 59.99607 * 14 9 7 17 17 N 1.46768 * 105.47394 * 143.53568 * 16 14 9 18 18 C 1.34415 * 111.30050 * 342.98769 * 17 16 14 19 19 O 1.21277 * 124.94204 * 180.36959 * 18 17 16 20 20 C 1.51283 * 110.11693 * 0.40260 * 18 17 16 21 21 H 0.96996 * 120.00212 * 0.02562 * 1 2 3 22 22 H 1.09004 * 115.56257 * 80.31961 * 11 9 7 23 23 H 1.09001 * 117.49555 * 145.02063 * 12 11 9 24 24 H 1.08994 * 117.49916 * 0.02562 * 12 11 9 25 25 H 1.08996 * 117.49456 * 107.47965 * 13 12 11 26 26 H 1.09001 * 117.49375 * 252.47502 * 13 12 11 27 27 H 1.08998 * 110.24968 * 262.53653 * 16 14 9 28 28 H 1.09002 * 110.24569 * 24.53708 * 16 14 9 29 29 H 0.96996 * 124.34630 * 162.96608 * 17 16 14 30 30 H 1.08993 * 110.49140 * 257.57791 * 20 18 17 31 31 H 1.09003 * 110.48311 * 134.92852 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1959 0.0831 9 6 1.2556 -2.4966 -0.1142 10 1 0.1958 -2.2939 -0.2694 11 6 1.8009 -3.2959 -1.2994 12 6 1.5980 -2.7115 -2.6987 13 6 0.7841 -3.9281 -2.2531 14 6 1.4371 -3.3044 1.1725 15 1 2.4827 -3.5772 1.3151 16 6 0.8969 -2.5278 2.3937 17 7 0.3006 -3.5425 3.2705 18 6 0.0801 -4.6913 2.6084 19 8 -0.4097 -5.6894 3.0930 20 6 0.5324 -4.5584 1.1709 21 1 -0.4850 0.8400 -0.0004 22 1 2.7241 -3.8443 -1.1120 23 1 2.3878 -2.8755 -3.4319 24 1 1.0765 -1.7575 -2.7750 25 1 -0.2728 -3.7743 -2.0359 26 1 1.0382 -4.8923 -2.6935 27 1 1.7119 -2.0176 2.9070 28 1 0.1399 -1.8093 2.0791 29 1 0.0927 -3.4022 4.2075 30 1 -0.3242 -4.4100 0.5135 31 1 1.1001 -5.4379 0.8668 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414479.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:17 Heat of formation + Delta-G solvation = -43.866535 kcal Electronic energy + Delta-G solvation = -14055.893982 eV Core-core repulsion = 11722.583155 eV Total energy + Delta-G solvation = -2333.310826 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15909 -38.62754 -36.97217 -34.67416 -32.74991 -29.62312 -27.49578 -25.42938 -22.91872 -21.78704 -21.30167 -20.67446 -18.54222 -18.11303 -16.88700 -16.48423 -15.94074 -15.59431 -15.11368 -14.66817 -14.20561 -13.90588 -13.61307 -13.33522 -12.88701 -12.63602 -12.44417 -12.14316 -12.07457 -11.84581 -11.47606 -10.93638 -10.80551 -10.71812 -10.41801 -10.16278 -9.94199 -8.01976 -6.06927 1.45406 1.51000 1.56284 1.63660 2.50032 2.58910 3.22897 3.41480 3.68129 3.93795 4.10008 4.39924 4.47778 4.52202 4.55368 4.85116 4.93617 4.98157 5.03184 5.20621 5.31082 5.38278 5.45838 5.56795 5.80268 5.84578 5.93221 6.05771 6.13804 6.48212 7.09628 7.34641 7.58161 9.04959 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.012227 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.947533 B = 2289.419601 C = 3038.636026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.029 3.971 3 Si 0.932 3.068 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.051 0.949 9 C 0.069 3.931 10 H 0.042 0.958 11 C -0.130 4.130 12 C -0.179 4.179 13 C -0.182 4.182 14 C -0.074 4.074 15 H 0.081 0.919 16 C 0.120 3.880 17 N -0.720 5.720 18 C 0.514 3.486 19 O -0.594 6.594 20 C -0.142 4.142 21 H 0.258 0.742 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.411 0.589 30 H 0.096 0.904 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -3.836 0.249 5.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.760 3.240 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.050 3.950 10 H 0.060 0.940 11 C -0.148 4.148 12 C -0.216 4.216 13 C -0.219 4.219 14 C -0.093 4.093 15 H 0.099 0.901 16 C -0.004 4.004 17 N -0.374 5.374 18 C 0.302 3.698 19 O -0.477 6.477 20 C -0.182 4.182 21 H 0.067 0.933 22 H 0.114 0.886 23 H 0.113 0.887 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.250 0.750 30 H 0.114 0.886 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.952 -4.197 0.382 5.145 hybrid contribution 0.112 1.434 0.322 1.473 sum 3.064 -2.763 0.704 4.186 Atomic orbital electron populations 1.69987 1.06834 1.26825 1.52333 1.25419 0.95211 1.01269 0.95038 0.85958 0.79214 0.81113 0.77721 1.21180 1.21832 1.19162 1.21201 0.93128 0.91131 1.48497 0.93117 1.18499 0.97320 0.91130 0.88035 0.93983 1.22490 0.99211 1.01155 0.91972 1.22634 1.03181 0.96766 0.99017 1.23000 0.96744 0.96908 1.05238 1.22205 0.98124 0.92668 0.96332 0.90098 1.22031 0.97899 0.89930 0.90491 1.46363 1.63148 1.13982 1.13859 1.21408 0.76142 0.81942 0.90321 1.90646 1.48025 1.33685 1.75321 1.22412 1.01870 1.01236 0.92675 0.93302 0.88553 0.88702 0.91902 0.90655 0.87764 0.90182 0.91688 0.75040 0.88563 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.27 12.63 21.45 0.27 -47.99 16 2 C 0.03 1.45 5.45 84.65 0.46 1.91 16 3 Si 0.93 40.21 29.54 68.60 2.03 42.24 16 4 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.50 -23.53 7.44 25.60 0.19 -23.34 16 8 H 0.05 2.39 7.82 -2.91 -0.02 2.36 16 9 C 0.07 2.89 1.56 -11.54 -0.02 2.87 16 10 H 0.04 2.05 6.67 -2.38 -0.02 2.03 16 11 C -0.13 -4.73 4.67 -10.77 -0.05 -4.78 16 12 C -0.18 -6.52 10.01 30.59 0.31 -6.21 16 13 C -0.18 -5.94 10.18 30.62 0.31 -5.63 16 14 C -0.07 -2.65 2.67 -9.74 -0.03 -2.67 16 15 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 16 C 0.12 4.31 6.70 86.83 0.58 4.89 16 17 N -0.72 -23.65 6.24 -459.81 -2.87 -26.52 16 18 C 0.51 18.87 8.43 87.90 0.74 19.61 16 19 O -0.59 -25.37 18.03 -3.02 -0.05 -25.43 16 20 C -0.14 -4.76 6.03 30.59 0.18 -4.58 16 21 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 22 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 23 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 24 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.07 2.62 8.08 -2.39 -0.02 2.60 16 26 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.06 2.76 7.89 -2.39 -0.02 2.74 16 29 H 0.41 11.55 8.96 -92.71 -0.83 10.71 16 30 H 0.10 3.34 7.84 -2.39 -0.02 3.32 16 31 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -55.73 263.46 2.34 -53.38 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.29 Total: 22.25 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 2.68 Total: -17.93 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -2.60 Total: -74.51 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -55.73 2.34 -53.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414479.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.518 kcal (2) G-P(sol) polarization free energy of solvation -55.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds