Wall clock time and date at job start Thu Apr 9 2020 14:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48508 * 109.46771 * 269.72492 * 3 2 1 5 5 H 1.48501 * 109.47199 * 29.72328 * 3 2 1 6 6 H 1.48500 * 109.47173 * 149.72486 * 3 2 1 7 7 C 1.37881 * 119.99931 * 179.72099 * 2 1 3 8 8 H 1.07999 * 119.99562 * 174.87999 * 7 2 1 9 9 C 1.50696 * 120.00207 * 354.87710 * 7 2 1 10 10 H 1.09004 * 109.46681 * 4.98914 * 9 7 2 11 11 C 1.52990 * 109.47305 * 244.98606 * 9 7 2 12 12 C 1.52999 * 117.50072 * 133.86512 * 11 9 7 13 13 C 1.53002 * 60.00135 * 252.51037 * 12 11 9 14 14 C 1.53002 * 109.47012 * 124.98327 * 9 7 2 15 15 H 1.09001 * 110.85408 * 56.21381 * 14 9 7 16 16 C 1.54483 * 110.97282 * 292.38278 * 14 9 7 17 17 N 1.46756 * 105.47331 * 216.46274 * 16 14 9 18 18 C 1.34424 * 111.30298 * 17.01988 * 17 16 14 19 19 O 1.21275 * 124.94451 * 179.55830 * 18 17 16 20 20 C 1.51280 * 110.11206 * 359.58601 * 18 17 16 21 21 H 0.96999 * 119.99820 * 0.27186 * 1 2 3 22 22 H 1.09003 * 115.55201 * 279.56979 * 11 9 7 23 23 H 1.09008 * 117.49513 * 359.97438 * 12 11 9 24 24 H 1.08998 * 117.50252 * 145.01677 * 12 11 9 25 25 H 1.08998 * 117.49799 * 252.50944 * 13 12 11 26 26 H 1.08991 * 117.49768 * 107.48858 * 13 12 11 27 27 H 1.09001 * 110.24505 * 335.46458 * 16 14 9 28 28 H 1.08997 * 110.24657 * 97.46218 * 16 14 9 29 29 H 0.96996 * 124.35343 * 197.03474 * 17 16 14 30 30 H 1.09000 * 110.48984 * 225.07253 * 20 18 17 31 31 H 1.08998 * 110.48534 * 102.43123 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5024 2.0430 -1.4002 5 1 1.4437 2.6544 0.6942 6 1 3.5438 1.4419 0.7058 7 6 2.0045 -1.1941 0.0058 8 1 3.0813 -1.1963 -0.0776 9 6 1.2556 -2.4960 0.1287 10 1 0.1832 -2.3011 0.1125 11 6 1.6303 -3.1776 1.4461 12 6 0.4919 -3.7411 2.2989 13 6 1.2272 -2.4755 2.7444 14 6 1.6256 -3.4096 -1.0415 15 1 2.7035 -3.5654 -1.0864 16 6 1.0921 -2.8425 -2.3758 17 7 0.6851 -4.0120 -3.1634 18 6 0.5500 -5.1008 -2.3868 19 8 0.2159 -6.1980 -2.7808 20 6 0.8749 -4.7582 -0.9496 21 1 -0.4850 0.8400 -0.0040 22 1 2.5737 -3.7237 1.4412 23 1 -0.5243 -3.6257 1.9214 24 1 0.6859 -4.6582 2.8550 25 1 1.9052 -2.5600 3.5937 26 1 0.6950 -1.5281 2.6599 27 1 0.2356 -2.1933 -2.1942 28 1 1.8788 -2.2940 -2.8940 29 1 0.5332 -4.0009 -4.1214 30 1 1.5161 -5.5226 -0.5107 31 1 -0.0401 -4.6465 -0.3679 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414481.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:20 Heat of formation + Delta-G solvation = -27.641847 kcal Electronic energy + Delta-G solvation = -14038.913690 eV Core-core repulsion = 11706.306419 eV Total energy + Delta-G solvation = -2332.607271 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67655 -37.05873 -35.44867 -32.84756 -31.20627 -28.01961 -25.96279 -23.63223 -21.42102 -20.36262 -19.81921 -19.01816 -16.91385 -16.46156 -15.37323 -14.65216 -14.43286 -14.09904 -13.54797 -13.08719 -12.64142 -12.41621 -11.99711 -11.67401 -11.14871 -10.89883 -10.85900 -10.62467 -10.37240 -10.31095 -9.87383 -9.39453 -9.19315 -8.97771 -8.62045 -8.50750 -8.49207 -6.12133 -4.13863 3.12308 3.23188 3.32298 3.35677 3.97158 4.34088 4.86760 5.11795 5.18794 5.40708 5.59440 5.85333 5.93129 6.01671 6.09392 6.26763 6.34051 6.39541 6.54848 6.65497 6.83568 6.89054 7.03319 7.14328 7.32671 7.40517 7.56338 7.73299 7.83012 8.30885 8.76961 8.96665 9.49599 10.95957 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029637 B = 0.011616 C = 0.009066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.544617 B = 2409.885952 C = 3087.715918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.053 0.947 9 C 0.066 3.934 10 H 0.076 0.924 11 C -0.118 4.118 12 C -0.204 4.204 13 C -0.169 4.169 14 C -0.079 4.079 15 H 0.070 0.930 16 C 0.114 3.886 17 N -0.735 5.735 18 C 0.516 3.484 19 O -0.563 6.563 20 C -0.152 4.152 21 H 0.262 0.738 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.399 0.601 30 H 0.088 0.912 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -3.054 -0.505 3.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.047 3.953 10 H 0.094 0.906 11 C -0.136 4.136 12 C -0.241 4.241 13 C -0.206 4.206 14 C -0.099 4.099 15 H 0.088 0.912 16 C -0.009 4.009 17 N -0.388 5.388 18 C 0.304 3.696 19 O -0.443 6.443 20 C -0.192 4.192 21 H 0.072 0.928 22 H 0.096 0.904 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.236 0.764 30 H 0.107 0.893 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.603 -3.465 -0.566 3.860 hybrid contribution 0.467 1.119 -0.328 1.256 sum 2.070 -2.346 -0.894 3.254 Atomic orbital electron populations 1.69874 1.05830 1.26743 1.50621 1.24911 0.94759 0.98993 0.94538 0.86708 0.80106 0.83763 0.78110 1.20756 1.21304 1.19852 1.20947 0.93204 0.90074 1.49991 0.92830 1.18645 0.99943 0.91093 0.85572 0.90608 1.22530 0.96030 1.00610 0.94477 1.22985 0.97985 0.96819 1.06324 1.22658 1.03387 0.96503 0.98047 1.22336 0.98557 0.92637 0.96329 0.91170 1.22163 1.00628 0.86481 0.91659 1.46460 1.69871 1.11874 1.10621 1.21242 0.75162 0.83337 0.89904 1.90660 1.49675 1.24007 1.79971 1.22475 1.03177 1.00110 0.93435 0.92819 0.90367 0.89697 0.90894 0.91070 0.88507 0.89773 0.91025 0.76377 0.89325 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.20 12.62 55.43 0.70 -22.51 16 2 C 0.07 1.74 5.45 -17.82 -0.10 1.64 16 3 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.50 -12.05 7.68 -34.44 -0.26 -12.31 16 8 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 9 C 0.07 1.41 1.58 -91.78 -0.15 1.27 16 10 H 0.08 1.83 6.63 -51.93 -0.34 1.48 16 11 C -0.12 -2.29 4.42 -90.62 -0.40 -2.69 16 12 C -0.20 -3.63 10.03 -26.73 -0.27 -3.90 16 13 C -0.17 -3.28 10.01 -26.73 -0.27 -3.55 16 14 C -0.08 -1.46 2.67 -88.99 -0.24 -1.70 16 15 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.11 2.03 6.94 -3.12 -0.02 2.01 16 17 N -0.73 -12.17 6.24 -59.21 -0.37 -12.54 16 18 C 0.52 9.66 8.43 -10.86 -0.09 9.57 16 19 O -0.56 -12.19 18.03 5.56 0.10 -12.09 16 20 C -0.15 -2.64 5.78 -26.74 -0.15 -2.80 16 21 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 22 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 23 H 0.08 1.56 8.08 -51.92 -0.42 1.14 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.10 2.13 8.14 -51.93 -0.42 1.71 16 27 H 0.08 1.69 7.82 -51.93 -0.41 1.28 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.40 5.69 8.96 -40.82 -0.37 5.33 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.10 1.78 7.75 -51.93 -0.40 1.38 16 LS Contribution 263.11 15.07 3.96 3.96 Total: -1.00 -26.84 263.11 -7.02 -33.86 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.44 Total: 7.08 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.95 Total: -12.47 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.33 Total: -35.05 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.10 Total: -12.09 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.84 -7.02 -33.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414481.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.219 kcal (2) G-P(sol) polarization free energy of solvation -26.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds