Wall clock time and date at job start Thu Apr 9 2020 14:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46765 * 124.34973 * 89.99953 * 10 9 7 12 12 C 1.54479 * 105.47568 * 197.01599 * 11 10 9 13 13 H 1.08998 * 110.96867 * 216.43082 * 12 11 10 14 14 C 1.52995 * 110.96951 * 92.70029 * 12 11 10 15 15 C 1.53003 * 117.49670 * 128.75292 * 14 12 11 16 16 C 1.52996 * 117.49912 * 60.09192 * 14 12 11 17 17 C 1.54637 * 101.76258 * 334.58313 * 12 11 10 18 18 C 1.34422 * 124.34909 * 269.69657 * 10 9 7 19 19 O 1.21272 * 124.94324 * 359.57681 * 18 10 9 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09003 * 110.24413 * 316.01555 * 11 10 9 24 24 H 1.09003 * 110.24927 * 77.92497 * 11 10 9 25 25 H 1.09002 * 115.55198 * 274.41693 * 14 12 11 26 26 H 1.09002 * 117.49879 * 359.97438 * 15 14 12 27 27 H 1.09002 * 117.50157 * 145.02107 * 15 14 12 28 28 H 1.08996 * 117.49946 * 214.97500 * 16 14 12 29 29 H 1.08996 * 117.49794 * 359.97262 * 16 14 12 30 30 H 1.08994 * 110.48308 * 143.47830 * 17 12 11 31 31 H 1.08999 * 110.48593 * 266.12057 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.7402 -4.2426 1.2104 12 6 3.9866 -5.0294 0.7480 13 1 4.0851 -5.9638 1.3005 14 6 5.2519 -4.1800 0.8842 15 6 6.4378 -4.7939 1.6309 16 6 5.6181 -3.6771 2.2819 17 6 3.6570 -5.2968 -0.7389 18 6 2.6923 -4.1924 -1.1111 19 8 2.4043 -3.8747 -2.2455 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 3.0230 -3.4814 1.9375 24 1 2.0033 -4.9202 1.6417 25 1 5.4724 -3.5263 0.0403 26 1 6.3165 -5.8027 2.0255 27 1 7.4385 -4.5438 1.2786 28 1 6.0798 -2.6927 2.3576 29 1 4.9573 -3.9509 3.1044 30 1 4.5602 -5.2389 -1.3462 31 1 3.1799 -6.2700 -0.8548 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690895629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:06 Heat of formation + Delta-G solvation = -17.866117 kcal Electronic energy + Delta-G solvation = -13870.082089 eV Core-core repulsion = 11537.898725 eV Total energy + Delta-G solvation = -2332.183364 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81230 -37.19364 -35.06440 -33.16048 -31.20765 -27.06083 -26.89994 -23.37980 -22.35783 -22.21219 -19.83589 -18.48248 -16.60290 -15.99713 -15.54910 -15.20956 -14.47527 -14.21109 -13.76275 -13.10792 -12.64218 -12.36901 -12.07252 -11.84177 -11.46333 -11.39503 -11.20272 -10.90203 -10.67380 -10.65058 -10.19952 -10.08117 -9.81422 -9.60458 -8.86758 -8.44595 -7.62228 -6.05803 -4.10916 3.30567 3.36089 3.37871 3.47288 3.86507 4.13766 4.45195 4.61240 4.83620 4.87572 5.08755 5.27747 5.28191 5.36101 5.58885 5.67897 5.73310 5.89911 5.98622 6.03745 6.17842 6.20763 6.32242 6.42646 7.02119 7.36544 7.61033 7.91704 8.21269 8.29895 8.88981 9.15709 9.55160 11.02093 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.010313 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.425872 B = 2714.304580 C = 3242.494924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.254 3.746 10 N -0.597 5.597 11 C 0.108 3.892 12 C -0.070 4.070 13 H 0.090 0.910 14 C -0.139 4.139 15 C -0.182 4.182 16 C -0.175 4.175 17 C -0.150 4.150 18 C 0.506 3.494 19 O -0.546 6.546 20 H 0.264 0.736 21 H 0.033 0.967 22 H 0.041 0.959 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -9.964 5.665 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.135 3.865 10 N -0.329 5.329 11 C -0.016 4.016 12 C -0.089 4.089 13 H 0.108 0.892 14 C -0.157 4.157 15 C -0.219 4.219 16 C -0.211 4.211 17 C -0.190 4.190 18 C 0.292 3.708 19 O -0.425 6.425 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.966 -9.589 5.097 14.083 hybrid contribution 0.441 1.032 0.094 1.126 sum 9.407 -8.557 5.191 13.735 Atomic orbital electron populations 1.69938 1.06000 1.27069 1.50452 1.24949 0.94900 0.99266 0.95050 0.86481 0.79670 0.82944 0.78247 1.20533 1.21111 1.19879 1.21456 0.93503 0.90558 1.51050 0.92269 1.19210 0.87042 0.81889 0.98310 1.48600 1.44939 1.34091 1.05242 1.22035 0.93606 0.96565 0.89396 1.21715 0.93310 0.97934 0.95949 0.89212 1.22233 0.94869 1.02184 0.96430 1.23031 0.95900 0.98097 1.04884 1.22921 1.03390 0.98623 0.96210 1.22405 1.00562 0.99447 0.96632 1.20625 0.81865 0.83205 0.85068 1.90656 1.63102 1.67354 1.21362 0.92671 0.94855 0.94108 0.90099 0.92164 0.87632 0.88943 0.89172 0.88841 0.88600 0.88759 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.25 6.78 5.69 -5.19 -0.03 6.75 16 10 N -0.60 -13.11 2.92 -173.78 -0.51 -13.62 16 11 C 0.11 1.78 6.84 -3.12 -0.02 1.76 16 12 C -0.07 -0.94 3.33 -88.99 -0.30 -1.23 16 13 H 0.09 0.93 7.97 -51.93 -0.41 0.52 16 14 C -0.14 -1.86 5.16 -90.62 -0.47 -2.33 16 15 C -0.18 -1.92 10.20 -26.69 -0.27 -2.20 16 16 C -0.17 -2.11 9.45 -26.69 -0.25 -2.36 16 17 C -0.15 -2.27 6.38 -26.73 -0.17 -2.45 16 18 C 0.51 11.06 8.02 -10.86 -0.09 10.97 16 19 O -0.55 -14.46 17.59 5.56 0.10 -14.36 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.04 1.22 7.92 -51.93 -0.41 0.81 16 23 H 0.08 1.37 7.11 -51.93 -0.37 1.00 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.11 1.63 8.10 -51.93 -0.42 1.21 16 26 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 1.08 7.99 -51.93 -0.41 0.66 16 30 H 0.09 1.34 7.91 -51.93 -0.41 0.93 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 266.46 15.07 4.02 4.02 Total: -1.00 -32.90 266.46 -7.21 -40.11 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.52 Total: -2.21 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.02 Total: -4.90 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.23 Total: -39.65 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.10 Total: -14.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.90 -7.21 -40.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690895629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.243 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds