Wall clock time and date at job start Thu Apr 9 2020 14:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46765 * 124.34973 * 89.99953 * 10 9 7 12 12 C 1.54479 * 105.47568 * 197.01599 * 11 10 9 13 13 H 1.08998 * 110.96867 * 216.43082 * 12 11 10 14 14 C 1.52995 * 110.96951 * 92.70029 * 12 11 10 15 15 C 1.53003 * 117.49670 * 128.75292 * 14 12 11 16 16 C 1.52996 * 117.49912 * 60.09192 * 14 12 11 17 17 C 1.54637 * 101.76258 * 334.58313 * 12 11 10 18 18 C 1.34422 * 124.34909 * 269.69657 * 10 9 7 19 19 O 1.21272 * 124.94324 * 359.57681 * 18 10 9 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09003 * 110.24413 * 316.01555 * 11 10 9 24 24 H 1.09003 * 110.24927 * 77.92497 * 11 10 9 25 25 H 1.09002 * 115.55198 * 274.41693 * 14 12 11 26 26 H 1.09002 * 117.49879 * 359.97438 * 15 14 12 27 27 H 1.09002 * 117.50157 * 145.02107 * 15 14 12 28 28 H 1.08996 * 117.49946 * 214.97500 * 16 14 12 29 29 H 1.08996 * 117.49794 * 359.97262 * 16 14 12 30 30 H 1.08994 * 110.48308 * 143.47830 * 17 12 11 31 31 H 1.08999 * 110.48593 * 266.12057 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.7402 -4.2426 1.2104 12 6 3.9866 -5.0294 0.7480 13 1 4.0851 -5.9638 1.3005 14 6 5.2519 -4.1800 0.8842 15 6 6.4378 -4.7939 1.6309 16 6 5.6181 -3.6771 2.2819 17 6 3.6570 -5.2968 -0.7389 18 6 2.6923 -4.1924 -1.1111 19 8 2.4043 -3.8747 -2.2455 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 3.0230 -3.4814 1.9375 24 1 2.0033 -4.9202 1.6417 25 1 5.4724 -3.5263 0.0403 26 1 6.3165 -5.8027 2.0255 27 1 7.4385 -4.5438 1.2786 28 1 6.0798 -2.6927 2.3576 29 1 4.9573 -3.9509 3.1044 30 1 4.5602 -5.2389 -1.3462 31 1 3.1799 -6.2700 -0.8548 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690895629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:05 Heat of formation + Delta-G solvation = -39.311667 kcal Electronic energy + Delta-G solvation = -13871.012037 eV Core-core repulsion = 11537.898725 eV Total energy + Delta-G solvation = -2333.113312 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.31710 -38.47288 -36.71119 -35.17903 -32.89053 -28.98554 -28.34942 -25.20619 -23.80820 -23.07387 -20.99053 -20.18032 -18.75115 -17.57421 -17.02496 -16.51803 -16.33353 -15.82574 -15.08137 -14.59070 -14.49949 -13.99390 -13.51177 -13.34275 -13.16709 -12.87576 -12.69326 -12.44902 -12.27791 -12.18342 -11.90045 -11.66813 -11.07215 -10.81092 -10.70623 -10.57332 -9.45111 -8.27108 -6.42846 1.33493 1.36613 1.46558 1.77135 2.31657 2.51826 2.91792 3.01795 3.52377 3.62737 3.81244 4.04742 4.27135 4.33057 4.55081 4.60320 4.69166 4.80465 4.88297 4.91551 5.01341 5.09954 5.13024 5.23868 5.37004 5.40019 5.55019 5.86183 6.00554 6.57167 6.66733 7.22395 7.44753 8.79876 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.010313 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.425872 B = 2714.304580 C = 3242.494924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.266 3.734 10 N -0.607 5.607 11 C 0.099 3.901 12 C -0.050 4.050 13 H 0.139 0.861 14 C -0.167 4.167 15 C -0.149 4.149 16 C -0.184 4.184 17 C -0.132 4.132 18 C 0.486 3.514 19 O -0.608 6.608 20 H 0.269 0.731 21 H 0.027 0.973 22 H -0.005 1.005 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -11.276 7.275 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.145 3.855 10 N -0.338 5.338 11 C -0.023 4.023 12 C -0.068 4.068 13 H 0.157 0.843 14 C -0.185 4.185 15 C -0.186 4.186 16 C -0.221 4.221 17 C -0.172 4.172 18 C 0.275 3.725 19 O -0.492 6.492 20 H 0.078 0.922 21 H 0.045 0.955 22 H 0.013 0.987 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.138 0.862 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.976 -10.933 6.754 16.900 hybrid contribution -0.211 1.437 -0.402 1.507 sum 10.766 -9.496 6.352 15.698 Atomic orbital electron populations 1.70049 1.07541 1.28337 1.50775 1.25879 0.95855 1.03096 0.94273 0.85400 0.78803 0.78277 0.78266 1.20580 1.19619 1.18649 1.21680 0.93254 0.91862 1.51574 0.92973 1.18687 0.87587 0.83519 0.95673 1.48663 1.44141 1.33067 1.07880 1.22415 0.95835 0.96958 0.87101 1.21764 0.91283 0.99135 0.94639 0.84283 1.22178 0.96768 1.03400 0.96185 1.23129 0.94926 0.98678 1.01860 1.22994 1.04271 0.99182 0.95673 1.22395 0.99024 0.97760 0.98017 1.21921 0.82211 0.84345 0.84005 1.90603 1.65257 1.69546 1.23749 0.92222 0.95489 0.98740 0.90840 0.89469 0.90774 0.86192 0.88489 0.89957 0.87491 0.87562 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.34 9.39 25.60 0.24 -32.10 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.90 5.69 85.64 0.49 15.38 16 10 N -0.61 -27.15 2.92 -822.31 -2.40 -29.55 16 11 C 0.10 3.08 6.84 86.83 0.59 3.68 16 12 C -0.05 -1.15 3.33 -9.74 -0.03 -1.18 16 13 H 0.14 1.97 7.97 -2.39 -0.02 1.95 16 14 C -0.17 -4.06 5.16 -10.80 -0.06 -4.12 16 15 C -0.15 -2.53 10.20 30.62 0.31 -2.21 16 16 C -0.18 -4.00 9.45 30.62 0.29 -3.71 16 17 C -0.13 -3.67 6.38 30.59 0.20 -3.47 16 18 C 0.49 21.54 8.02 87.90 0.71 22.25 16 19 O -0.61 -33.72 17.59 -3.01 -0.05 -33.77 16 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 21 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 22 H -0.01 -0.35 7.92 -2.39 -0.02 -0.37 16 23 H 0.07 2.40 7.11 -2.39 -0.02 2.38 16 24 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 26 H 0.12 1.43 8.08 -2.39 -0.02 1.41 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.11 2.07 7.99 -2.39 -0.02 2.05 16 30 H 0.11 2.76 7.91 -2.39 -0.02 2.74 16 31 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -75.83 266.46 4.16 -71.68 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.10 Total: 5.06 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 3.20 Total: -4.55 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.11 Total: -86.04 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.05 Total: -33.77 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.83 4.16 -71.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690895629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.364 kcal (2) G-P(sol) polarization free energy of solvation -75.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds