Wall clock time and date at job start Thu Apr 9 2020 14:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46763 * 124.34496 * 90.00070 * 10 9 7 12 12 C 1.54483 * 105.47039 * 197.01413 * 11 10 9 13 13 H 1.09003 * 110.96410 * 92.73956 * 12 11 10 14 14 C 1.53000 * 110.96974 * 216.46733 * 12 11 10 15 15 C 1.53008 * 117.49609 * 248.62335 * 14 12 11 16 16 C 1.53002 * 117.49494 * 180.02562 * 14 12 11 17 17 C 1.54626 * 101.76543 * 334.58833 * 12 11 10 18 18 C 1.34413 * 124.35058 * 269.70472 * 10 9 7 19 19 O 1.21289 * 124.94351 * 359.56804 * 18 10 9 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.08997 * 110.25265 * 316.01619 * 11 10 9 24 24 H 1.09003 * 110.24847 * 77.93159 * 11 10 9 25 25 H 1.08992 * 115.55239 * 34.33235 * 14 12 11 26 26 H 1.08994 * 117.50188 * 359.97438 * 15 14 12 27 27 H 1.09000 * 117.49638 * 145.02084 * 15 14 12 28 28 H 1.09007 * 117.49398 * 214.97671 * 16 14 12 29 29 H 1.08996 * 117.50292 * 359.97438 * 16 14 12 30 30 H 1.08996 * 110.48625 * 143.47685 * 17 12 11 31 31 H 1.08998 * 110.48276 * 266.11815 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2763 -3.3557 -1.2108 12 6 4.3347 -4.8285 -0.7482 13 1 3.3600 -5.3067 -0.8453 14 6 5.4018 -5.6040 -1.5232 15 6 4.9231 -6.6797 -2.5004 16 6 5.5862 -7.0842 -1.1826 17 6 4.7315 -4.6764 0.7386 18 6 4.2576 -3.2888 1.1106 19 8 4.1268 -2.8803 2.2452 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.4755 -3.2202 -1.9378 24 1 5.2315 -3.0565 -1.6425 25 1 6.2909 -5.0356 -1.7959 26 1 3.8481 -6.8352 -2.5908 27 1 5.4973 -6.8190 -3.4164 28 1 6.5968 -7.4897 -1.2314 29 1 4.9476 -7.5054 -0.4062 30 1 4.2300 -5.4296 1.3462 31 1 5.8129 -4.7498 0.8541 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690895630.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:07 Heat of formation + Delta-G solvation = -13.916956 kcal Electronic energy + Delta-G solvation = -13656.861774 eV Core-core repulsion = 11324.849659 eV Total energy + Delta-G solvation = -2332.012115 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85316 -37.41256 -35.27813 -33.11387 -31.39061 -27.57175 -27.22693 -23.13341 -22.45736 -21.99082 -20.08232 -18.57399 -16.99570 -16.17918 -15.74803 -15.29872 -14.53907 -14.18035 -13.65166 -13.17656 -12.90754 -12.72068 -12.31267 -11.79334 -11.68812 -11.60335 -11.48365 -10.98011 -10.71204 -10.59460 -10.30657 -10.14231 -9.96370 -9.55956 -8.95647 -8.61869 -7.71232 -6.11343 -4.10933 3.25396 3.33488 3.34928 3.37420 3.67525 3.98759 4.37199 4.50270 4.71835 4.77275 4.93232 5.15917 5.22312 5.31474 5.45944 5.54957 5.56785 5.82277 5.84387 5.98742 6.03818 6.10617 6.15968 6.36330 6.62569 6.87489 7.40570 7.57040 8.09070 8.44123 8.91038 9.02302 9.48630 11.01969 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.007825 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.469397 B = 3577.203892 C = 3784.395151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.225 3.775 10 N -0.597 5.597 11 C 0.112 3.888 12 C -0.071 4.071 13 H 0.089 0.911 14 C -0.140 4.140 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.146 4.146 18 C 0.509 3.491 19 O -0.543 6.543 20 H 0.265 0.735 21 H 0.039 0.961 22 H 0.028 0.972 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.436 -10.947 -5.687 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.105 3.895 10 N -0.329 5.329 11 C -0.012 4.012 12 C -0.090 4.090 13 H 0.108 0.892 14 C -0.158 4.158 15 C -0.216 4.216 16 C -0.216 4.216 17 C -0.187 4.187 18 C 0.296 3.704 19 O -0.421 6.421 20 H 0.075 0.925 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.099 0.901 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.166 -10.498 -5.102 16.153 hybrid contribution 0.233 0.891 -0.146 0.933 sum 11.399 -9.607 -5.248 15.804 Atomic orbital electron populations 1.69896 1.06206 1.27072 1.50230 1.24868 0.94801 0.98987 0.94359 0.86853 0.80597 0.83749 0.78600 1.19987 1.20822 1.18853 1.21361 0.89199 0.94976 1.51685 0.90638 1.19589 0.95640 0.76962 0.97340 1.48315 1.63637 1.15184 1.05725 1.21981 1.01125 0.89211 0.88869 1.21724 0.98342 0.95267 0.93691 0.89223 1.22224 1.00348 0.90809 1.02439 1.23007 1.01222 1.03584 0.93762 1.22923 1.01991 0.97397 0.99305 1.22342 1.02995 0.96764 0.96560 1.20666 0.77483 0.87389 0.84902 1.90667 1.54517 1.75575 1.21318 0.92482 0.94308 0.95455 0.90122 0.91916 0.87458 0.88600 0.88916 0.88941 0.88684 0.88849 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.53 -15.58 9.94 -34.44 -0.34 -15.92 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.22 5.61 4.76 -5.19 -0.02 5.58 16 10 N -0.60 -12.77 2.92 -173.78 -0.51 -13.28 16 11 C 0.11 1.79 6.91 -3.12 -0.02 1.77 16 12 C -0.07 -0.94 3.28 -88.99 -0.29 -1.23 16 13 H 0.09 1.19 8.01 -51.93 -0.42 0.78 16 14 C -0.14 -1.42 5.04 -90.61 -0.46 -1.87 16 15 C -0.18 -1.61 10.19 -26.75 -0.27 -1.88 16 16 C -0.18 -1.59 10.13 -26.75 -0.27 -1.86 16 17 C -0.15 -2.18 6.31 -26.74 -0.17 -2.35 16 18 C 0.51 10.90 8.02 -10.86 -0.09 10.82 16 19 O -0.54 -14.07 17.59 5.55 0.10 -13.97 16 20 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 21 H 0.04 1.03 6.98 -51.93 -0.36 0.67 16 22 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 23 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 24 H 0.06 0.86 7.73 -51.93 -0.40 0.46 16 25 H 0.11 1.02 7.90 -51.93 -0.41 0.61 16 26 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.10 1.24 7.90 -51.93 -0.41 0.83 16 LS Contribution 264.00 15.07 3.98 3.98 Total: -1.00 -33.82 264.00 -6.88 -40.70 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.52 Total: -2.39 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.03 Total: -4.92 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.27 Total: -40.28 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.10 Total: -13.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.82 -6.88 -40.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690895630.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.779 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds