Wall clock time and date at job start Thu Apr 9 2020 14:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46763 * 124.34496 * 90.00070 * 10 9 7 12 12 C 1.54483 * 105.47039 * 197.01413 * 11 10 9 13 13 H 1.09003 * 110.96410 * 92.73956 * 12 11 10 14 14 C 1.53000 * 110.96974 * 216.46733 * 12 11 10 15 15 C 1.53008 * 117.49609 * 248.62335 * 14 12 11 16 16 C 1.53002 * 117.49494 * 180.02562 * 14 12 11 17 17 C 1.54626 * 101.76543 * 334.58833 * 12 11 10 18 18 C 1.34413 * 124.35058 * 269.70472 * 10 9 7 19 19 O 1.21289 * 124.94351 * 359.56804 * 18 10 9 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.08997 * 110.25265 * 316.01619 * 11 10 9 24 24 H 1.09003 * 110.24847 * 77.93159 * 11 10 9 25 25 H 1.08992 * 115.55239 * 34.33235 * 14 12 11 26 26 H 1.08994 * 117.50188 * 359.97438 * 15 14 12 27 27 H 1.09000 * 117.49638 * 145.02084 * 15 14 12 28 28 H 1.09007 * 117.49398 * 214.97671 * 16 14 12 29 29 H 1.08996 * 117.50292 * 359.97438 * 16 14 12 30 30 H 1.08996 * 110.48625 * 143.47685 * 17 12 11 31 31 H 1.08998 * 110.48276 * 266.11815 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2763 -3.3557 -1.2108 12 6 4.3347 -4.8285 -0.7482 13 1 3.3600 -5.3067 -0.8453 14 6 5.4018 -5.6040 -1.5232 15 6 4.9231 -6.6797 -2.5004 16 6 5.5862 -7.0842 -1.1826 17 6 4.7315 -4.6764 0.7386 18 6 4.2576 -3.2888 1.1106 19 8 4.1268 -2.8803 2.2452 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.4755 -3.2202 -1.9378 24 1 5.2315 -3.0565 -1.6425 25 1 6.2909 -5.0356 -1.7959 26 1 3.8481 -6.8352 -2.5908 27 1 5.4973 -6.8190 -3.4164 28 1 6.5968 -7.4897 -1.2314 29 1 4.9476 -7.5054 -0.4062 30 1 4.2300 -5.4296 1.3462 31 1 5.8129 -4.7498 0.8541 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690895630.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:07 Heat of formation + Delta-G solvation = -36.718812 kcal Electronic energy + Delta-G solvation = -13657.850537 eV Core-core repulsion = 11324.849659 eV Total energy + Delta-G solvation = -2333.000878 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32881 -38.51582 -36.86294 -35.12288 -33.10339 -29.46562 -28.57202 -24.81392 -23.57320 -23.03776 -21.04294 -20.25201 -19.18855 -17.69607 -17.18734 -16.47181 -16.25091 -15.68591 -14.99896 -14.89052 -14.50294 -14.09430 -13.98330 -13.67479 -13.07077 -12.67734 -12.64980 -12.44034 -12.26095 -12.10757 -11.84269 -11.71868 -11.11723 -10.96398 -10.85118 -10.50331 -9.47618 -8.38543 -6.45662 1.30595 1.35246 1.45943 1.69211 2.28235 2.36289 2.92863 2.95123 3.45757 3.60871 3.78565 4.06205 4.31399 4.32482 4.48437 4.54201 4.61021 4.68126 4.77058 4.85418 4.91710 4.95341 5.16287 5.19770 5.39087 5.40146 5.44139 5.64089 6.19167 6.45206 6.56103 7.14671 7.35239 8.78505 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.007825 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.469397 B = 3577.203892 C = 3784.395151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.547 4.547 8 H 0.027 0.973 9 C 0.230 3.770 10 N -0.608 5.608 11 C 0.105 3.895 12 C -0.057 4.057 13 H 0.083 0.917 14 C -0.145 4.145 15 C -0.177 4.177 16 C -0.171 4.171 17 C -0.129 4.129 18 C 0.490 3.510 19 O -0.601 6.601 20 H 0.270 0.730 21 H 0.020 0.980 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.885 -11.373 -7.072 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.172 1.172 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.586 4.586 8 H 0.045 0.955 9 C 0.109 3.891 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.076 4.076 13 H 0.101 0.899 14 C -0.164 4.164 15 C -0.214 4.214 16 C -0.208 4.208 17 C -0.169 4.169 18 C 0.279 3.721 19 O -0.484 6.484 20 H 0.079 0.921 21 H 0.038 0.962 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.140 0.860 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.630 -10.970 -6.536 18.678 hybrid contribution -0.616 0.938 0.279 1.156 sum 13.015 -10.032 -6.257 17.584 Atomic orbital electron populations 1.70050 1.08279 1.28570 1.51378 1.25911 0.95755 1.03526 0.93500 0.85655 0.79105 0.77824 0.80054 1.17221 1.20462 1.17892 1.21577 0.91581 0.93407 1.52017 0.95471 1.19288 0.92745 0.79680 0.97405 1.48491 1.62959 1.14461 1.08007 1.22321 1.02268 0.90391 0.86708 1.21649 0.99414 0.93783 0.92736 0.89866 1.22115 0.99813 0.91309 1.03128 1.23086 1.01278 1.02520 0.94515 1.23018 1.02903 0.95840 0.99002 1.22325 1.04644 0.92228 0.97682 1.21868 0.76530 0.89702 0.84004 1.90616 1.56959 1.77239 1.23542 0.92056 0.96211 0.92826 0.91114 0.88651 0.85994 0.89177 0.87403 0.87219 0.88844 0.87722 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.12 13.96 21.45 0.30 -59.82 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.95 44.44 27.47 68.60 1.88 46.33 16 4 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 7 C -0.55 -33.05 9.94 25.60 0.25 -32.80 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.23 11.57 4.76 85.63 0.41 11.97 16 10 N -0.61 -26.02 2.92 -822.29 -2.40 -28.41 16 11 C 0.11 3.19 6.91 86.83 0.60 3.79 16 12 C -0.06 -1.38 3.28 -9.74 -0.03 -1.41 16 13 H 0.08 2.12 8.01 -2.39 -0.02 2.10 16 14 C -0.15 -2.42 5.04 -10.79 -0.05 -2.47 16 15 C -0.18 -2.60 10.19 30.58 0.31 -2.29 16 16 C -0.17 -2.38 10.13 30.58 0.31 -2.07 16 17 C -0.13 -3.60 6.31 30.59 0.19 -3.40 16 18 C 0.49 21.09 8.02 87.90 0.71 21.79 16 19 O -0.60 -32.14 17.59 -3.06 -0.05 -32.20 16 20 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 21 H 0.02 1.07 6.98 -2.39 -0.02 1.05 16 22 H 0.05 2.40 7.57 -2.39 -0.02 2.38 16 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.10 2.30 7.73 -2.39 -0.02 2.28 16 25 H 0.12 1.75 7.90 -2.39 -0.02 1.73 16 26 H 0.09 1.44 8.11 -2.39 -0.02 1.42 16 27 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.13 2.82 7.90 -2.39 -0.02 2.80 16 Total: -1.00 -77.07 264.00 3.94 -73.13 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.04 Total: 6.72 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 3.16 Total: -5.74 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.10 Total: -88.24 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.20 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -77.07 3.94 -73.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690895630.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.415 kcal (2) G-P(sol) polarization free energy of solvation -77.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds