Wall clock time and date at job start Thu Apr 9 2020 14:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00110 * 2 1 4 4 H 1.48497 * 109.47334 * 239.99614 * 3 2 1 5 5 H 1.48502 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47281 * 119.99550 * 3 2 1 7 7 C 1.37880 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.53022 * 109.47255 * 179.97438 * 9 7 2 11 11 H 1.10418 * 107.58029 * 52.43823 * 10 9 7 12 12 C 1.52364 * 109.98878 * 295.00105 * 10 9 7 13 13 C 1.52394 * 111.86159 * 188.25445 * 12 10 9 14 14 N 1.45872 * 112.30563 * 47.75801 * 13 12 10 15 15 C 1.45893 * 113.70447 * 71.21760 * 14 13 12 16 16 C 1.52276 * 112.28010 * 289.04743 * 15 14 13 17 17 C 1.52210 * 112.47964 * 313.52524 * 16 15 14 18 18 C 1.52066 * 112.85713 * 45.48964 * 17 16 15 19 19 H 1.10083 * 108.83914 * 189.16436 * 18 17 16 20 20 C 1.46497 * 112.35099 * 302.59278 * 14 13 12 21 21 H 0.97002 * 119.99788 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47551 * 59.99869 * 9 7 2 23 23 H 1.09006 * 109.47365 * 299.99782 * 9 7 2 24 24 H 1.10440 * 108.08240 * 69.50758 * 12 10 9 25 25 H 1.08487 * 111.01177 * 312.86534 * 12 10 9 26 26 H 1.09613 * 109.04817 * 286.51803 * 13 12 10 27 27 H 1.09593 * 109.11500 * 169.11574 * 13 12 10 28 28 H 1.09632 * 109.24399 * 167.80744 * 15 14 13 29 29 H 1.09622 * 109.26303 * 50.26427 * 15 14 13 30 30 H 1.08612 * 110.94892 * 78.64442 * 16 15 14 31 31 H 1.10604 * 107.83912 * 194.63898 * 16 15 14 32 32 H 1.09225 * 109.72146 * 169.69043 * 17 16 15 33 33 H 1.10366 * 108.32424 * 285.46718 * 17 16 15 34 34 H 1.08786 * 110.04969 * 183.50008 * 20 14 13 35 35 H 1.08789 * 110.04350 * 305.03868 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6623 0.0005 11 1 2.9498 -3.4988 0.8349 12 6 3.0438 -3.6650 -1.2972 13 6 3.9023 -4.9168 -1.4327 14 7 3.1540 -6.1352 -1.1440 15 6 2.1769 -6.4807 -2.1709 16 6 0.9893 -5.5277 -2.1818 17 6 0.4395 -5.2669 -0.7866 18 6 1.5302 -4.9855 0.2350 19 1 1.0808 -4.9709 1.2398 20 6 2.5624 -6.1213 0.1962 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 3.7168 -2.7894 -1.2874 25 1 2.3912 -3.5460 -2.1556 26 1 4.7527 -4.8435 -0.7450 27 1 4.3014 -4.9696 -2.4520 28 1 1.8172 -7.5018 -1.9984 29 1 2.6626 -6.4606 -3.1535 30 1 1.2424 -4.5975 -2.6821 31 1 0.1862 -5.9940 -2.7825 32 1 -0.2817 -4.4475 -0.8218 33 1 -0.1199 -6.1610 -0.4614 34 1 2.0671 -7.0693 0.3950 35 1 3.3329 -5.9379 0.9420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251287277.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:04 Heat of formation + Delta-G solvation = -23.227888 kcal Electronic energy + Delta-G solvation = -14724.178072 eV Core-core repulsion = 12527.595300 eV Total energy + Delta-G solvation = -2196.582773 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00141 -34.27694 -32.67889 -32.11427 -30.33618 -27.99740 -25.10544 -23.78666 -22.21258 -21.17706 -20.24505 -17.76031 -16.30029 -15.37961 -14.70126 -14.41714 -14.37358 -14.00639 -13.25473 -12.84308 -12.57442 -12.14609 -12.02032 -11.68344 -11.44256 -11.12766 -10.94826 -10.85523 -10.66285 -10.45525 -10.23266 -10.10859 -9.55245 -9.30457 -9.20219 -8.82554 -8.31891 -7.58200 -5.97606 -3.98976 3.33284 3.37863 3.40198 4.37017 4.47225 5.06626 5.16789 5.37792 5.41027 5.52858 5.54405 5.64859 5.70636 5.86094 5.89972 5.98903 6.06418 6.13412 6.23994 6.29971 6.49035 6.54016 6.60221 6.70053 6.78419 6.97395 7.11300 7.26301 7.53215 7.64845 7.70855 7.87139 8.03091 8.47145 9.07514 9.64373 11.13624 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.048797 B = 0.008977 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.671545 B = 3118.360544 C = 3314.102973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.032 3.968 10 C -0.068 4.068 11 H 0.049 0.951 12 C -0.138 4.138 13 C 0.066 3.934 14 N -0.552 5.552 15 C 0.072 3.928 16 C -0.151 4.151 17 C -0.101 4.101 18 C -0.114 4.114 19 H 0.063 0.937 20 C 0.068 3.932 21 H 0.260 0.740 22 H 0.015 0.985 23 H 0.013 0.987 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -11.214 -2.650 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.005 4.005 10 C -0.087 4.087 11 H 0.068 0.932 12 C -0.176 4.176 13 C -0.061 4.061 14 N -0.273 5.273 15 C -0.056 4.056 16 C -0.190 4.190 17 C -0.138 4.138 18 C -0.134 4.134 19 H 0.081 0.919 20 C -0.060 4.060 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.031 0.969 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.946 -11.456 -2.662 12.405 hybrid contribution -0.270 1.759 -0.003 1.779 sum 3.675 -9.697 -2.665 10.707 Atomic orbital electron populations 1.69958 1.06007 1.26540 1.51096 1.25015 0.94811 0.99114 0.95547 0.86710 0.79617 0.83421 0.78560 1.20328 1.21353 1.20315 1.21237 0.92869 0.91074 1.50131 0.92824 1.19101 0.93579 0.90882 0.96906 1.20919 0.97761 0.94008 0.96019 0.93221 1.21961 0.99401 0.97342 0.98930 1.21838 0.95890 0.87741 1.00680 1.60236 1.28990 1.35516 1.02597 1.21691 0.91269 0.97853 0.94808 1.21988 0.98500 1.00916 0.97612 1.21112 0.97596 1.01056 0.94077 1.21547 0.96330 0.96712 0.98790 0.91899 1.22033 0.96344 0.97567 0.90048 0.93069 0.96655 0.96915 0.91939 0.91969 0.91754 0.92052 0.91840 0.91756 0.91112 0.93249 0.91308 0.93911 0.91575 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.47 8.49 -34.44 -0.29 -14.77 16 8 H 0.05 1.47 7.03 -52.48 -0.37 1.10 16 9 C 0.03 0.83 3.91 -27.87 -0.11 0.72 16 10 C -0.07 -1.41 1.75 -91.33 -0.16 -1.57 16 11 H 0.05 1.06 8.20 -51.12 -0.42 0.64 16 12 C -0.14 -2.60 4.21 -27.37 -0.12 -2.71 16 13 C 0.07 1.04 5.77 -4.69 -0.03 1.02 16 14 N -0.55 -8.33 4.78 -236.25 -1.13 -9.46 16 15 C 0.07 1.00 5.77 -4.74 -0.03 0.97 16 16 C -0.15 -2.30 5.13 -27.50 -0.14 -2.45 16 17 C -0.10 -1.69 5.07 -27.61 -0.14 -1.83 16 18 C -0.11 -1.99 2.47 -91.22 -0.23 -2.22 16 19 H 0.06 1.11 8.23 -51.31 -0.42 0.69 16 20 C 0.07 1.03 5.68 -3.77 -0.02 1.01 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.42 7.26 -51.93 -0.38 0.04 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 1.26 7.28 -51.11 -0.37 0.89 16 25 H 0.06 1.23 5.58 -52.22 -0.29 0.94 16 26 H 0.06 0.98 8.19 -51.58 -0.42 0.56 16 27 H 0.06 0.88 8.08 -51.59 -0.42 0.47 16 28 H 0.06 0.80 8.19 -51.57 -0.42 0.38 16 29 H 0.06 0.83 8.08 -51.58 -0.42 0.41 16 30 H 0.07 1.20 5.71 -52.15 -0.30 0.90 16 31 H 0.05 0.67 8.27 -51.01 -0.42 0.25 16 32 H 0.07 1.31 6.96 -51.80 -0.36 0.95 16 33 H 0.04 0.64 8.26 -51.15 -0.42 0.21 16 34 H 0.07 0.90 8.12 -52.05 -0.42 0.48 16 35 H 0.07 1.05 8.12 -52.05 -0.42 0.63 16 LS Contribution 260.66 15.07 3.93 3.93 Total: -1.00 -29.35 260.66 -8.68 -38.03 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.83 Total: -2.65 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.36 Total: -20.31 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.39 Total: -35.81 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.35 -8.68 -38.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251287277.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.801 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds