Wall clock time and date at job start Thu Apr 9 2020 14:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.67809 * 56.76315 * 9 7 2 11 11 C 1.54891 * 110.75545 * 293.32157 * 9 7 2 12 12 C 1.54263 * 104.19910 * 203.74547 * 11 9 7 13 13 C 1.53872 * 106.59848 * 23.61014 * 12 11 9 14 14 H 1.09000 * 110.03383 * 240.71961 * 13 12 11 15 15 N 1.46897 * 110.03302 * 119.28587 * 13 12 11 16 16 C 1.48538 * 111.00163 * 305.43813 * 15 13 12 17 17 C 1.54930 * 103.22860 * 159.71820 * 16 15 13 18 18 C 1.54594 * 102.92326 * 322.58696 * 17 16 15 19 19 C 1.47907 * 111.00061 * 62.83273 * 15 13 12 20 20 C 1.54270 * 106.59943 * 0.02562 * 13 12 11 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09007 * 110.48658 * 322.42804 * 11 9 7 23 23 H 1.08997 * 110.48305 * 85.06254 * 11 9 7 24 24 H 1.09006 * 110.02927 * 264.32782 * 12 11 9 25 25 H 1.09005 * 110.03184 * 142.89542 * 12 11 9 26 26 H 1.08999 * 110.66811 * 278.15734 * 16 15 13 27 27 H 1.09003 * 110.66251 * 41.28153 * 16 15 13 28 28 H 1.09004 * 110.72616 * 204.22581 * 17 16 15 29 29 H 1.09000 * 110.87577 * 81.01507 * 17 16 15 30 30 H 1.09001 * 110.30799 * 263.03944 * 18 17 16 31 31 H 1.09004 * 110.30918 * 140.87557 * 18 17 16 32 32 H 1.08999 * 109.91300 * 333.51190 * 19 15 13 33 33 H 1.08997 * 109.91438 * 94.80706 * 19 15 13 34 34 H 1.09003 * 110.48406 * 217.71198 * 20 13 12 35 35 H 1.08992 * 110.48800 * 95.06965 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5749 -2.5532 -0.8526 11 6 0.4795 -2.6875 1.3303 12 6 0.2964 -4.2147 1.4485 13 6 1.4100 -4.8576 0.6033 14 1 0.9735 -5.4595 -0.1937 15 7 2.2680 -5.6935 1.4536 16 6 2.7975 -4.9160 2.6032 17 6 3.1992 -6.0146 3.6192 18 6 2.0847 -7.0715 3.4442 19 6 1.5014 -6.8127 2.0427 20 6 2.2314 -3.6987 0.0016 21 1 -0.4850 -0.8401 -0.0004 22 1 1.0645 -2.3075 2.1679 23 1 -0.4889 -2.1896 1.2832 24 1 -0.6806 -4.5046 1.0615 25 1 0.3927 -4.5229 2.4896 26 1 3.6678 -4.3317 2.3043 27 1 2.0242 -4.2707 3.0200 28 1 3.1997 -5.6190 4.6349 29 1 4.1731 -6.4362 3.3706 30 1 1.3151 -6.9392 4.2047 31 1 2.5039 -8.0762 3.4999 32 1 0.4490 -6.5403 2.1230 33 1 1.6110 -7.7038 1.4246 34 1 2.5412 -3.9386 -1.0156 35 1 3.0992 -3.4824 0.6247 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259390361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:15 Heat of formation + Delta-G solvation = -13.470014 kcal Electronic energy + Delta-G solvation = -14456.614238 eV Core-core repulsion = 12260.454598 eV Total energy + Delta-G solvation = -2196.159640 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.47376 -36.18667 -32.80678 -30.44103 -28.75663 -28.05117 -26.11870 -23.60383 -21.70592 -20.80308 -19.33300 -18.53615 -16.92055 -15.99446 -15.32233 -14.82882 -13.88031 -13.71010 -13.23039 -13.17980 -12.25257 -12.21611 -11.86561 -11.63473 -11.24217 -10.94963 -10.87072 -10.70774 -10.64047 -10.42571 -10.27433 -10.03875 -9.83122 -9.68970 -9.30236 -8.40138 -8.29143 -7.96141 -6.28313 -3.99518 3.46121 3.47599 3.66265 4.34765 4.57541 4.83228 4.86521 5.08055 5.37655 5.48903 5.50545 5.58043 5.67167 5.76164 5.86077 5.88181 5.97114 6.11080 6.16525 6.29239 6.33733 6.42317 6.47746 6.62774 6.68878 6.88493 6.99958 7.08898 7.31463 7.39234 7.52783 7.74072 8.32314 8.50365 8.94868 9.72315 11.09745 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053795 B = 0.008012 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.368619 B = 3493.741547 C = 3667.238283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.591 4.591 8 H 0.048 0.952 9 C 0.034 3.966 10 H 0.022 0.978 11 C -0.112 4.112 12 C -0.156 4.156 13 C 0.070 3.930 14 H 0.072 0.928 15 N -0.511 5.511 16 C 0.030 3.970 17 C -0.125 4.125 18 C -0.130 4.130 19 C 0.030 3.970 20 C -0.098 4.098 21 H 0.271 0.729 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -11.176 5.720 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.185 4.185 3 Si 0.894 3.106 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.629 4.629 8 H 0.066 0.934 9 C 0.015 3.985 10 H 0.040 0.960 11 C -0.150 4.150 12 C -0.195 4.195 13 C -0.039 4.039 14 H 0.090 0.910 15 N -0.234 5.234 16 C -0.097 4.097 17 C -0.163 4.163 18 C -0.168 4.168 19 C -0.098 4.098 20 C -0.136 4.136 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.257 -9.729 5.370 11.580 hybrid contribution -0.591 -1.430 0.500 1.626 sum 2.666 -11.159 5.869 12.887 Atomic orbital electron populations 1.70793 1.06861 1.30888 1.46652 1.25764 0.96573 1.02470 0.93743 0.83597 0.74928 0.75596 0.76476 1.20878 1.21505 1.21555 1.21951 0.93990 0.91477 1.55461 0.93373 1.19739 0.93178 0.93227 0.92387 0.96027 1.22516 1.00345 0.91196 1.00947 1.22885 0.98406 0.99326 0.98909 1.22595 0.92415 0.94138 0.94734 0.91011 1.65003 1.32584 1.08745 1.17090 1.23280 1.00263 0.95696 0.90463 1.22486 0.98755 0.96175 0.98852 1.22382 0.98219 0.99480 0.96701 1.22847 0.96649 0.95623 0.94665 1.22394 0.98712 0.93711 0.98821 0.91726 0.92899 0.92931 0.93116 0.92819 0.89996 0.92535 0.91509 0.91137 0.91942 0.91500 0.93618 0.91044 0.93296 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.65 13.49 55.43 0.75 -26.90 16 2 C 0.02 0.53 5.36 -17.82 -0.10 0.43 16 3 Si 1.07 25.37 29.90 -169.99 -5.08 20.29 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.59 -16.66 8.49 -34.44 -0.29 -16.95 16 8 H 0.05 1.36 7.77 -52.48 -0.41 0.95 16 9 C 0.03 0.84 2.38 -89.76 -0.21 0.63 16 10 H 0.02 0.59 7.91 -51.93 -0.41 0.18 16 11 C -0.11 -2.58 5.59 -25.07 -0.14 -2.72 16 12 C -0.16 -2.96 4.71 -25.62 -0.12 -3.08 16 13 C 0.07 1.29 3.04 -66.60 -0.20 1.09 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 15 N -0.51 -8.46 5.32 -221.17 -1.18 -9.64 16 16 C 0.03 0.49 5.43 -1.90 -0.01 0.48 16 17 C -0.12 -1.57 7.06 -24.87 -0.18 -1.75 16 18 C -0.13 -1.53 6.93 -25.38 -0.18 -1.71 16 19 C 0.03 0.42 6.26 -2.75 -0.02 0.40 16 20 C -0.10 -2.12 5.74 -25.05 -0.14 -2.26 16 21 H 0.27 8.10 5.56 -40.82 -0.23 7.87 16 22 H 0.05 1.27 7.88 -51.93 -0.41 0.87 16 23 H 0.05 1.29 6.66 -51.93 -0.35 0.94 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.95 5.36 -51.93 -0.28 0.68 16 26 H 0.08 1.38 7.11 -51.93 -0.37 1.01 16 27 H 0.06 0.98 5.53 -51.93 -0.29 0.69 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.40 6.20 -51.93 -0.32 1.08 16 LS Contribution 262.57 15.07 3.96 3.96 Total: -1.00 -29.42 262.57 -8.71 -38.14 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.57 Total: -0.40 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -1.59 Total: -25.44 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.43 Total: -36.54 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.42 -8.71 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259390361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.666 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds