Wall clock time and date at job start Thu Apr 9 2020 14:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.34671 * 126.58981 * 274.68780 * 3 2 1 5 5 N 1.34124 * 108.02011 * 179.87357 * 4 3 2 6 6 C 1.30503 * 109.25491 * 0.39982 * 5 4 3 7 7 C 1.50703 * 125.65011 * 179.77295 * 6 5 4 8 8 N 1.46899 * 109.47188 * 274.97741 * 7 6 5 9 9 C 1.46899 * 111.00252 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47415 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00035 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99592 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00629 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99642 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47073 * 90.00044 * 14 12 10 16 16 H 1.48495 * 109.47484 * 210.00517 * 14 12 10 17 17 H 1.48501 * 109.47173 * 330.00512 * 14 12 10 18 18 N 1.35045 * 108.70028 * 359.75492 * 6 5 4 19 19 H 0.96993 * 126.39801 * 180.02562 * 18 6 5 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 25 25 H 1.07998 * 125.98968 * 0.02752 * 4 3 2 26 26 H 1.09005 * 109.46935 * 34.97213 * 7 6 5 27 27 H 1.08999 * 109.47390 * 154.97655 * 7 6 5 28 28 H 1.00901 * 111.00029 * 303.95493 * 8 7 6 29 29 H 1.09001 * 109.47274 * 300.00521 * 9 8 7 30 30 H 1.09003 * 109.46792 * 59.99690 * 9 8 7 31 31 H 0.96996 * 120.00123 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2165 2.2072 -1.0777 5 7 2.6706 3.3952 -0.6518 6 6 2.7828 3.3721 0.6482 7 6 3.2652 4.5115 1.5086 8 7 4.7327 4.4914 1.5700 9 6 5.2399 5.5909 2.4017 10 6 6.7454 5.5375 2.4415 11 1 7.2728 4.7644 1.9026 12 6 7.4496 6.4764 3.1652 13 7 6.8075 7.4182 3.8211 14 14 9.3158 6.4106 3.2140 15 1 9.8690 7.2194 2.0980 16 1 9.7968 6.9580 4.5079 17 1 9.7653 5.0022 3.0746 18 7 2.3946 2.1582 1.0948 19 1 2.3756 1.8639 2.0188 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 2.0290 1.9305 -2.1047 26 1 2.9324 5.4568 1.0797 27 1 2.8579 4.4053 2.5140 28 1 5.0685 3.6004 1.9040 29 1 4.9208 6.5435 1.9788 30 1 4.8463 5.4926 3.4134 31 1 7.3029 8.0784 4.3305 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719136059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:06 Heat of formation + Delta-G solvation = 18.374414 kcal Electronic energy + Delta-G solvation = -13012.352334 eV Core-core repulsion = 10714.033229 eV Total energy + Delta-G solvation = -2298.319105 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.04743 -37.25250 -35.05746 -34.44379 -33.25340 -30.73146 -28.45125 -26.10956 -24.14805 -23.46452 -21.94604 -21.35758 -18.81004 -18.05385 -16.82990 -16.51198 -16.05963 -15.45477 -15.24408 -14.79497 -14.62290 -14.40435 -13.94211 -13.34968 -13.19621 -13.18045 -12.64345 -12.61077 -12.40568 -12.05747 -11.99787 -11.37019 -10.99291 -10.84483 -10.67046 -9.28449 -9.10459 -8.23308 -6.34438 1.03608 1.41605 1.43928 1.54630 2.10437 2.17364 2.40946 3.10236 3.45541 3.70407 3.94416 4.10771 4.22998 4.41720 4.47291 4.59776 4.75380 4.78998 4.97262 5.05150 5.08024 5.22629 5.37281 5.42937 5.58550 5.83504 5.98024 6.35261 6.48760 6.63270 6.84158 7.19839 7.36178 8.88089 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.069726 B = 0.005151 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.476212 B = 5434.742150 C = 5522.417194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.009 4.009 4 C -0.057 4.057 5 N -0.514 5.514 6 C 0.203 3.797 7 C 0.148 3.852 8 N -0.683 5.683 9 C 0.209 3.791 10 C -0.538 4.538 11 H 0.061 0.939 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.973 3.027 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.264 1.264 18 N -0.552 5.552 19 H 0.429 0.571 20 H 0.080 0.920 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.183 0.817 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.334 0.666 29 H 0.004 0.996 30 H -0.027 1.027 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -15.680 -3.982 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.126 4.126 4 C -0.204 4.204 5 N -0.234 5.234 6 C -0.061 4.061 7 C 0.017 3.983 8 N -0.315 5.315 9 C 0.082 3.918 10 C -0.576 4.576 11 H 0.079 0.921 12 C -0.194 4.194 13 N -0.572 5.572 14 Si 0.797 3.203 15 H -0.201 1.201 16 H -0.204 1.204 17 H -0.188 1.188 18 N -0.157 5.157 19 H 0.269 0.731 20 H 0.099 0.901 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.102 0.898 24 H 0.120 0.880 25 H 0.200 0.800 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.022 0.978 30 H -0.009 1.009 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.004 -14.488 -4.998 18.867 hybrid contribution 0.440 -0.506 1.870 1.986 sum -10.563 -14.994 -3.128 18.606 Atomic orbital electron populations 1.21749 0.93680 1.02895 1.01827 1.20133 0.96481 0.86654 1.04830 1.21814 1.06900 0.97514 0.86401 1.22539 1.07511 0.90248 1.00133 1.70174 1.18901 1.24935 1.09410 1.22896 1.04094 0.88111 0.91026 1.20107 0.89008 0.93879 0.95301 1.60452 1.06444 1.07144 1.57474 1.19250 0.94597 0.89215 0.88758 1.21498 0.92347 1.13678 1.30104 0.92063 1.25909 1.04205 0.94648 0.94656 1.70070 1.37795 1.16579 1.32722 0.85333 0.78648 0.78744 0.77558 1.20052 1.20398 1.18831 1.43160 1.50195 1.11738 1.10602 0.73146 0.90081 0.93615 0.92633 0.89830 0.87972 0.79959 0.89932 0.92776 0.84870 0.97777 1.00901 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.03 16 2 C -0.04 -0.59 6.49 29.85 0.19 -0.40 16 3 C -0.01 -0.22 6.49 40.95 0.27 0.05 16 4 C -0.06 -1.64 11.79 83.52 0.98 -0.66 16 5 N -0.51 -19.20 11.25 -188.13 -2.12 -21.31 16 6 C 0.20 6.91 7.67 138.13 1.06 7.97 16 7 C 0.15 5.51 6.31 85.56 0.54 6.05 16 8 N -0.68 -30.63 6.48 -521.98 -3.38 -34.01 16 9 C 0.21 11.28 5.44 85.56 0.47 11.75 16 10 C -0.54 -31.11 9.32 25.60 0.24 -30.87 16 11 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 12 C 0.00 0.25 5.46 84.66 0.46 0.71 16 13 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 14 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 N -0.55 -14.00 6.15 -174.60 -1.07 -15.07 16 19 H 0.43 8.15 8.96 -92.71 -0.83 7.32 16 20 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 21 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 22 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.18 4.28 8.06 -2.91 -0.02 4.26 16 26 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.33 14.07 8.72 -89.69 -0.78 13.28 16 29 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 30 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -70.11 272.02 0.18 -69.93 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.48 Total: 16.21 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.92 Total: -6.44 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -6.29 Total: -126.29 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.11 0.18 -69.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719136059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.306 kcal (2) G-P(sol) polarization free energy of solvation -70.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds