Wall clock time and date at job start Thu Apr 9 2020 14:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.47221 * 2 1 4 4 C 1.48539 * 110.99934 * 52.60222 * 3 2 1 5 5 C 1.54940 * 103.22513 * 159.72167 * 4 3 2 6 6 C 1.54590 * 102.92203 * 322.58801 * 5 4 3 7 7 C 1.47900 * 111.00131 * 169.99927 * 3 2 1 8 8 H 1.09002 * 109.91794 * 333.50785 * 7 3 2 9 9 C 1.53003 * 110.08046 * 94.70988 * 7 3 2 10 10 C 1.50694 * 109.47158 * 294.49474 * 9 7 3 11 11 C 1.35036 * 120.00292 * 125.00082 * 10 9 7 12 12 C 1.40065 * 120.00093 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00389 * 0.02562 * 12 11 10 14 14 C 1.40308 * 119.99849 * 179.97438 * 12 11 10 15 15 N 1.30688 * 120.00285 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99897 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47261 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47419 * 120.00239 * 16 14 12 19 19 H 1.48501 * 109.47320 * 240.00375 * 16 14 12 20 20 H 1.08998 * 109.46816 * 60.00089 * 1 2 3 21 21 H 1.08997 * 109.46896 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46706 * 300.00201 * 1 2 3 23 23 H 1.08992 * 109.47019 * 239.99867 * 2 1 3 24 24 H 1.08998 * 109.46816 * 119.99911 * 2 1 3 25 25 H 1.08998 * 110.66260 * 41.28731 * 4 3 2 26 26 H 1.09004 * 110.80689 * 278.22376 * 4 3 2 27 27 H 1.09004 * 110.72067 * 204.22623 * 5 4 3 28 28 H 1.08997 * 110.72261 * 80.94784 * 5 4 3 29 29 H 1.09005 * 110.30621 * 263.03984 * 6 5 4 30 30 H 1.09001 * 110.39544 * 140.91652 * 6 5 4 31 31 H 1.09005 * 109.46949 * 54.49808 * 9 7 3 32 32 H 1.08997 * 109.46729 * 174.48922 * 9 7 3 33 33 H 1.08000 * 119.99682 * 304.99827 * 10 9 7 34 34 H 1.08001 * 119.99500 * 359.97438 * 11 10 9 35 35 H 0.96996 * 119.99862 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.4031 2.1676 1.1017 5 6 2.3782 3.3585 1.2793 6 6 3.7624 2.7091 1.0512 7 6 3.4784 1.4314 0.2398 8 1 3.7896 0.5543 0.8073 9 6 4.2285 1.4828 -1.0928 10 6 4.0069 0.1953 -1.8439 11 6 3.5182 0.2232 -3.1024 12 6 3.3127 -0.9734 -3.8007 13 1 3.5448 -1.9186 -3.3324 14 6 2.8044 -0.9444 -5.1081 15 7 2.5232 0.1993 -5.6746 16 14 2.5298 -2.5404 -6.0391 17 1 2.9232 -3.6875 -5.1820 18 1 1.0945 -2.6622 -6.4001 19 1 3.3528 -2.5404 -7.2752 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.3518 1.5731 2.0138 26 1 0.4118 2.5209 0.8179 27 1 2.3059 3.7692 2.2864 28 1 2.1858 4.1291 0.5327 29 1 4.2236 2.4563 2.0059 30 1 4.4085 3.3806 0.4857 31 1 3.8576 2.3183 -1.6865 32 1 5.2940 1.6152 -0.9051 33 1 4.2390 -0.7499 -1.3756 34 1 3.2858 1.1684 -3.5705 35 1 2.1715 0.2193 -6.5783 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687679708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:06:32 Heat of formation + Delta-G solvation = -8.284415 kcal Electronic energy + Delta-G solvation = -14002.081956 eV Core-core repulsion = 11806.147181 eV Total energy + Delta-G solvation = -2195.934775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.74734 -34.21452 -33.02706 -32.21055 -29.40019 -28.12193 -26.06895 -23.43707 -22.03034 -20.14674 -19.48911 -18.22933 -16.72098 -15.53587 -15.01086 -14.73045 -14.21272 -13.64909 -13.01208 -12.78162 -12.35884 -12.17356 -11.90531 -11.43207 -11.26993 -11.14603 -11.02856 -10.73921 -10.65252 -10.49356 -10.36513 -10.20511 -9.84389 -9.39873 -9.38923 -9.09639 -7.77111 -7.36389 -6.60815 -4.09216 3.01466 3.15596 3.21939 4.04539 4.07814 4.55781 5.07372 5.13485 5.33180 5.56940 5.67862 5.69026 5.78102 5.86869 5.97706 6.05425 6.13400 6.15902 6.24788 6.34138 6.46399 6.60292 6.68951 6.84068 6.89740 7.02893 7.32055 7.42945 7.44002 7.70471 7.80374 8.14676 8.58530 8.84446 9.26776 9.43995 10.43215 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040016 B = 0.007753 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.552492 B = 3610.476356 C = 3953.077340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.495 5.495 4 C 0.031 3.969 5 C -0.123 4.123 6 C -0.130 4.130 7 C 0.075 3.925 8 H 0.039 0.961 9 C -0.024 4.024 10 C -0.411 4.411 11 C 0.060 3.940 12 C -0.464 4.464 13 H 0.065 0.935 14 C 0.073 3.927 15 N -0.824 5.824 16 Si 0.907 3.093 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.275 1.275 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.044 0.956 23 H 0.103 0.897 24 H 0.017 0.983 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 2.603 9.529 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.219 5.219 4 C -0.097 4.097 5 C -0.161 4.161 6 C -0.169 4.169 7 C -0.033 4.033 8 H 0.057 0.943 9 C -0.062 4.062 10 C -0.433 4.433 11 C 0.040 3.960 12 C -0.495 4.495 13 H 0.083 0.917 14 C -0.143 4.143 15 N -0.451 5.451 16 Si 0.732 3.268 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.121 0.879 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.605 2.905 8.785 9.613 hybrid contribution -0.022 -1.186 0.300 1.223 sum -2.627 1.720 9.085 9.612 Atomic orbital electron populations 1.21836 0.96107 1.01068 1.01586 1.22347 0.94586 0.89617 1.01773 1.64670 1.04240 1.12005 1.41019 1.23221 0.98523 0.94782 0.93164 1.22447 0.95115 0.97834 1.00665 1.22529 0.97185 0.97796 0.99362 1.22502 0.88510 0.95028 0.97285 0.94312 1.19974 0.95008 0.98075 0.93103 1.21828 1.28686 0.93721 0.99015 1.19856 0.88426 0.96001 0.91694 1.19586 1.37455 0.94997 0.97512 0.91705 1.26056 0.92837 0.97224 0.98145 1.69586 1.34599 1.26644 1.14314 0.86299 0.78446 0.82596 0.79464 1.18634 1.20068 1.20086 0.91831 0.92859 0.93728 0.87911 0.96434 0.94927 0.90774 0.92043 0.91014 0.92565 0.91175 0.93307 0.95283 0.91705 0.90472 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.57 37.16 0.36 -2.01 16 2 C 0.04 0.84 5.40 -3.82 -0.02 0.82 16 3 N -0.49 -9.32 4.93 -222.57 -1.10 -10.41 16 4 C 0.03 0.48 5.10 -1.89 -0.01 0.47 16 5 C -0.12 -1.70 7.06 -24.87 -0.18 -1.87 16 6 C -0.13 -1.98 6.57 -25.38 -0.17 -2.15 16 7 C 0.08 1.40 2.60 -66.64 -0.17 1.23 16 8 H 0.04 0.75 7.57 -51.93 -0.39 0.35 16 9 C -0.02 -0.52 5.14 -27.88 -0.14 -0.66 16 10 C -0.41 -10.36 7.04 -35.45 -0.25 -10.61 16 11 C 0.06 1.68 8.99 -40.03 -0.36 1.32 16 12 C -0.46 -13.11 9.05 -38.12 -0.35 -13.45 16 13 H 0.06 1.81 7.85 -52.49 -0.41 1.39 16 14 C 0.07 1.95 5.50 -17.26 -0.09 1.85 16 15 N -0.82 -22.76 12.86 55.57 0.71 -22.05 16 16 Si 0.91 19.92 29.56 -169.99 -5.03 14.89 16 17 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.62 6.79 -51.93 -0.35 0.27 16 23 H 0.10 2.29 6.36 -51.93 -0.33 1.96 16 24 H 0.02 0.31 7.81 -51.93 -0.41 -0.09 16 25 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 26 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 31 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.68 8.05 -52.49 -0.42 1.26 16 34 H 0.08 2.29 7.27 -52.49 -0.38 1.91 16 35 H 0.28 6.96 8.29 -40.82 -0.34 6.62 16 LS Contribution 280.76 15.07 4.23 4.23 Total: -1.00 -28.04 280.76 -8.55 -36.59 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.99 Total: 1.82 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -1.38 Total: -25.08 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.38 Total: -32.46 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.04 -8.55 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687679708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.309 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds