Wall clock time and date at job start Thu Apr 9 2020 14:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34785 * 117.00384 * 2 1 4 4 O 1.21553 * 119.99706 * 359.97438 * 3 2 1 5 5 C 1.47169 * 120.00388 * 180.27156 * 3 2 1 6 6 C 1.36504 * 126.24688 * 179.72186 * 5 3 2 7 7 N 1.35336 * 106.86303 * 179.97438 * 6 5 3 8 8 C 1.46502 * 126.12149 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47182 * 90.00525 * 8 7 6 10 10 H 1.08003 * 119.99730 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00329 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99550 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00241 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47372 * 89.99835 * 13 11 9 15 15 H 1.48502 * 109.47099 * 209.99781 * 13 11 9 16 16 H 1.48503 * 109.47034 * 329.99742 * 13 11 9 17 17 C 1.35860 * 107.74823 * 0.02562 * 7 6 5 18 18 N 1.30156 * 109.02265 * 359.72298 * 17 7 6 19 19 H 1.09001 * 109.47216 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47461 * 300.00591 * 1 2 3 21 21 H 1.09010 * 109.46796 * 60.00380 * 1 2 3 22 22 H 1.07995 * 126.56857 * 359.97438 * 6 5 3 23 23 H 1.09002 * 109.46696 * 210.00321 * 8 7 6 24 24 H 1.08998 * 109.47377 * 330.00108 * 8 7 6 25 25 H 0.97008 * 119.99542 * 179.97438 * 12 11 9 26 26 H 1.08005 * 125.49130 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5336 1.2779 -0.0060 6 6 4.2820 2.4195 -0.0121 7 7 5.5804 2.0378 -0.0156 8 6 6.7427 2.9296 -0.0219 9 6 7.1463 3.2388 1.3967 10 1 6.5921 2.8139 2.2206 11 6 8.2229 4.0641 1.6429 12 7 8.8981 4.5810 0.6396 13 14 8.7236 4.4468 3.4014 14 1 9.7081 3.4371 3.8667 15 1 9.3361 5.7984 3.4586 16 1 7.5246 4.4092 4.2767 17 6 5.6127 0.6796 -0.0123 18 7 4.3928 0.2262 -0.0010 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 3.9093 3.4332 -0.0137 23 1 7.5709 2.4433 -0.5375 24 1 6.4875 3.8555 -0.5371 25 1 9.6554 5.1620 0.8128 26 1 6.5068 0.0737 -0.0143 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308150511.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:30 Heat of formation + Delta-G solvation = -50.848200 kcal Electronic energy + Delta-G solvation = -13123.125242 eV Core-core repulsion = 10588.252662 eV Total energy + Delta-G solvation = -2534.872580 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.08411 -41.04312 -37.41341 -36.00816 -34.07110 -31.00450 -29.66444 -28.39624 -25.52249 -24.29460 -22.05826 -21.33606 -19.01992 -18.64934 -18.09362 -17.38122 -17.02331 -16.29455 -15.91951 -15.15138 -14.71774 -14.46208 -14.39977 -14.04029 -13.71182 -13.06842 -12.94750 -12.72376 -12.33790 -11.93879 -11.82066 -11.75931 -11.24102 -10.73941 -10.59399 -9.66605 -8.38691 -6.54205 0.37672 1.36617 1.39725 1.44179 1.52490 1.64124 2.18081 2.32943 2.36433 2.96108 3.45826 4.01908 4.15596 4.33089 4.34735 4.37599 4.56094 4.72820 4.90458 5.24476 5.30284 5.49527 5.57085 5.74758 6.14199 6.55031 6.64798 6.97483 7.18648 8.69450 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.057397 B = 0.006582 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.712077 B = 4252.981573 C = 4381.229797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.563 3.437 4 O -0.538 6.538 5 C -0.097 4.097 6 C 0.052 3.948 7 N -0.427 5.427 8 C 0.241 3.759 9 C -0.563 4.563 10 H 0.057 0.943 11 C 0.027 3.973 12 N -0.914 5.914 13 Si 0.968 3.032 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.273 1.273 17 C 0.190 3.810 18 N -0.479 5.479 19 H 0.134 0.866 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.192 0.808 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.274 0.726 26 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 -5.961 -0.893 10.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.409 3.591 4 O -0.429 6.429 5 C -0.224 4.224 6 C -0.093 4.093 7 N -0.104 5.104 8 C 0.121 3.879 9 C -0.601 4.601 10 H 0.076 0.924 11 C -0.175 4.175 12 N -0.552 5.552 13 Si 0.792 3.208 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.198 1.198 17 C -0.095 4.095 18 N -0.198 5.198 19 H 0.152 0.848 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.209 0.791 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.550 -6.329 -0.947 10.679 hybrid contribution 0.519 1.316 0.734 1.593 sum -8.031 -5.013 -0.213 9.470 Atomic orbital electron populations 1.23626 0.74302 1.05866 1.02754 1.86657 1.25170 1.31366 1.83679 1.19641 0.86608 0.81502 0.71360 1.90803 1.66411 1.36684 1.49031 1.19440 0.91157 0.90784 1.21000 1.22753 0.83644 1.00464 1.02405 1.46067 1.07339 1.08930 1.48027 1.19663 0.81130 0.88895 0.98196 1.21475 1.15276 1.31417 0.91905 0.92435 1.25662 0.95440 0.94605 1.01810 1.69985 1.20267 1.32171 1.32799 0.85396 0.78490 0.77915 0.78985 1.19419 1.20271 1.19785 1.25726 0.97939 0.81641 1.04176 1.70626 0.99866 1.30237 1.19054 0.84789 0.91759 0.91563 0.79062 0.92485 0.93841 0.91712 0.74662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.57 113.37 1.20 1.79 15 2 O -0.35 -11.50 10.58 -56.97 -0.60 -12.10 15 3 C 0.56 21.01 7.95 70.17 0.56 21.57 15 4 O -0.54 -21.06 16.67 19.66 0.33 -20.73 15 5 C -0.10 -3.84 7.01 40.47 0.28 -3.56 15 6 C 0.05 2.05 11.26 83.75 0.94 2.99 15 7 N -0.43 -17.20 2.71 -532.43 -1.44 -18.64 15 8 C 0.24 10.80 5.87 85.63 0.50 11.30 15 9 C -0.56 -28.19 9.39 25.60 0.24 -27.95 15 10 H 0.06 2.96 7.81 -2.91 -0.02 2.93 15 11 C 0.03 1.35 5.46 84.65 0.46 1.81 15 12 N -0.91 -48.08 13.29 21.45 0.28 -47.80 15 13 Si 0.97 40.32 29.54 68.60 2.03 42.34 15 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 15 H -0.28 -11.28 7.11 99.48 0.71 -10.58 15 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 17 C 0.19 6.98 12.55 180.10 2.26 9.24 15 18 N -0.48 -18.88 11.33 -188.86 -2.14 -21.02 15 19 H 0.13 1.90 8.14 -2.39 -0.02 1.88 15 20 H 0.06 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.07 1.36 8.14 -2.38 -0.02 1.34 15 22 H 0.19 6.91 8.06 -2.91 -0.02 6.89 15 23 H 0.06 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.04 2.03 8.14 -2.39 -0.02 2.02 15 25 H 0.27 13.58 8.31 -92.70 -0.77 12.81 15 26 H 0.24 6.87 8.06 -2.91 -0.02 6.85 15 Total: -1.00 -59.68 248.43 6.09 -53.60 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.18 Total: 7.16 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 6.45 Total: 17.19 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -3.30 Total: -87.46 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.27 Total: -32.83 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -59.68 6.09 -53.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308150511.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.748 kcal (2) G-P(sol) polarization free energy of solvation -59.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds