Wall clock time and date at job start Thu Apr 9 2020 14:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48495 * 109.46927 * 89.99734 * 3 2 1 5 5 H 1.48494 * 109.46939 * 209.99778 * 3 2 1 6 6 H 1.48500 * 109.46687 * 329.99769 * 3 2 1 7 7 C 1.37879 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99759 * 186.34941 * 7 2 1 9 9 C 1.50697 * 120.00002 * 6.34880 * 7 2 1 10 10 O 1.45192 * 112.85038 * 293.84656 * 9 7 2 11 11 C 1.34231 * 117.00540 * 294.97094 * 10 9 7 12 12 O 1.20825 * 119.99872 * 2.83798 * 11 10 9 13 13 C 1.50704 * 120.00370 * 182.84471 * 11 10 9 14 14 C 1.52996 * 117.49652 * 248.62007 * 13 11 10 15 15 C 1.52998 * 117.49583 * 179.97438 * 13 11 10 16 16 C 1.53781 * 113.61273 * 162.54151 * 9 7 2 17 17 C 1.53776 * 87.08110 * 220.01814 * 16 9 7 18 18 C 1.53780 * 113.61175 * 65.04790 * 9 7 2 19 19 H 0.97004 * 119.99789 * 175.04169 * 1 2 3 20 20 H 1.08992 * 115.54819 * 34.32810 * 13 11 10 21 21 H 1.09001 * 117.49643 * 359.97438 * 14 13 11 22 22 H 1.08998 * 117.49928 * 145.01735 * 14 13 11 23 23 H 1.08999 * 117.49475 * 214.97584 * 15 13 11 24 24 H 1.08998 * 117.49993 * 359.97438 * 15 13 11 25 25 H 1.09002 * 113.61792 * 334.56868 * 16 9 7 26 26 H 1.09001 * 113.61297 * 105.47152 * 16 9 7 27 27 H 1.09003 * 113.61591 * 270.88259 * 17 16 9 28 28 H 1.09009 * 113.61260 * 139.98211 * 17 16 9 29 29 H 1.09002 * 113.61146 * 254.52348 * 18 9 7 30 30 H 1.08994 * 113.61691 * 25.43014 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4000 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1968 0.1040 9 6 1.2580 -2.4952 -0.1432 10 8 0.3944 -2.7779 0.9893 11 6 0.9910 -2.9862 2.1736 12 8 2.1908 -2.8836 2.2720 13 6 0.1642 -3.3482 3.3805 14 6 0.0594 -2.3123 4.5015 15 6 0.9031 -3.5735 4.7011 16 6 2.1538 -3.6779 -0.5475 17 6 1.0072 -4.1303 -1.4669 18 6 0.5620 -2.6588 -1.5047 19 1 -0.4850 -0.8370 -0.0726 20 1 -0.7115 -3.9661 3.1822 21 1 0.5888 -1.3691 4.3662 22 1 -0.8855 -2.2483 5.0409 23 1 0.5129 -4.3390 5.3718 24 1 1.9872 -3.4603 4.6969 25 1 3.0536 -3.3802 -1.0858 26 1 2.3576 -4.3704 0.2693 27 1 0.2907 -4.7910 -0.9787 28 1 1.3447 -4.5093 -2.4317 29 1 -0.5194 -2.5286 -1.4607 30 1 1.0265 -2.0825 -2.3046 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379365293.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:08:02 Heat of formation + Delta-G solvation = -45.086059 kcal Electronic energy + Delta-G solvation = -14443.787011 eV Core-core repulsion = 12012.704640 eV Total energy + Delta-G solvation = -2431.082371 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66638 -37.72211 -35.59076 -34.14342 -32.38596 -26.19840 -24.89083 -24.43490 -22.37778 -22.15979 -19.70601 -18.39246 -17.46080 -16.49352 -15.29958 -14.94182 -14.32344 -13.87862 -13.74809 -13.60201 -12.63881 -12.34943 -11.68435 -11.39489 -11.33828 -10.86674 -10.59183 -10.41578 -10.32347 -10.28127 -10.10480 -10.05926 -10.02332 -9.37176 -8.96058 -8.45801 -8.13582 -6.38958 -4.16575 3.16473 3.42357 3.43951 3.61777 3.72059 4.26725 4.49755 5.06105 5.19056 5.22379 5.34694 5.55338 5.56238 5.71397 5.80107 5.88383 6.06373 6.23083 6.31581 6.35799 6.37422 6.68080 6.70601 6.87206 7.09540 7.36820 7.75619 8.17677 8.44090 8.82511 9.09683 9.60273 10.99219 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.024306 B = 0.014802 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.714570 B = 1891.155942 C = 2599.995824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.030 3.970 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.594 4.594 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.353 6.353 11 C 0.492 3.508 12 O -0.505 6.505 13 C -0.168 4.168 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.109 4.109 19 H 0.280 0.720 20 H 0.123 0.877 21 H 0.101 0.899 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -5.905 3.782 7.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.178 4.178 3 Si 0.897 3.103 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.631 4.631 8 H 0.077 0.923 9 C 0.176 3.824 10 O -0.269 6.269 11 C 0.334 3.666 12 O -0.393 6.393 13 C -0.187 4.187 14 C -0.188 4.188 15 C -0.191 4.191 16 C -0.182 4.182 17 C -0.186 4.186 18 C -0.147 4.147 19 H 0.092 0.908 20 H 0.141 0.859 21 H 0.120 0.880 22 H 0.120 0.880 23 H 0.118 0.882 24 H 0.125 0.875 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.722 -4.230 3.805 5.735 hybrid contribution 0.208 -1.674 -0.061 1.688 sum -0.514 -5.904 3.743 7.009 Atomic orbital electron populations 1.70665 1.06771 1.32172 1.43145 1.25875 0.96520 1.02581 0.92785 0.83561 0.74855 0.74996 0.76927 1.21441 1.21245 1.20865 1.22055 0.94951 0.90383 1.55727 0.92311 1.20911 0.86967 0.93531 0.80983 1.86374 1.43940 1.79211 1.17416 1.21876 0.86714 0.73895 0.84130 1.90554 1.16055 1.47056 1.85661 1.21810 1.02632 1.06220 0.88032 1.22923 1.02106 0.94549 0.99186 1.22983 1.00189 0.99742 0.96221 1.23315 0.97579 0.98730 0.98564 1.22963 0.99017 0.97508 0.99154 1.22932 1.00024 0.94261 0.97440 0.90823 0.85892 0.88012 0.87967 0.88164 0.87546 0.89972 0.92945 0.91248 0.92584 0.92311 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.52 55.43 0.75 -25.83 16 2 C 0.03 0.87 5.36 -17.82 -0.10 0.77 16 3 Si 1.07 25.57 29.91 -169.99 -5.08 20.49 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.59 -17.06 7.37 -34.44 -0.25 -17.31 16 8 H 0.06 1.75 7.82 -52.48 -0.41 1.34 16 9 C 0.21 5.41 0.11 -90.96 -0.01 5.40 16 10 O -0.35 -9.03 9.22 -39.26 -0.36 -9.39 16 11 C 0.49 11.71 7.13 36.01 0.26 11.97 16 12 O -0.50 -13.25 14.37 -18.75 -0.27 -13.52 16 13 C -0.17 -3.02 6.30 -91.77 -0.58 -3.60 16 14 C -0.15 -2.39 10.24 -26.71 -0.27 -2.66 16 15 C -0.15 -2.30 10.05 -26.71 -0.27 -2.57 16 16 C -0.14 -3.28 6.90 -25.92 -0.18 -3.45 16 17 C -0.15 -2.94 8.03 -25.92 -0.21 -3.15 16 18 C -0.11 -2.50 6.55 -25.92 -0.17 -2.67 16 19 H 0.28 8.34 5.76 -40.82 -0.24 8.10 16 20 H 0.12 1.92 8.14 -51.93 -0.42 1.50 16 21 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 22 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 23 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.11 1.73 7.67 -51.93 -0.40 1.33 16 25 H 0.08 1.83 8.09 -51.93 -0.42 1.41 16 26 H 0.05 1.19 7.33 -51.93 -0.38 0.81 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.06 1.35 7.74 -51.93 -0.40 0.94 16 30 H 0.09 2.02 8.09 -51.93 -0.42 1.60 16 LS Contribution 257.73 15.07 3.88 3.88 Total: -1.00 -32.06 257.73 -6.86 -38.92 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.00 Total: 2.72 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -1.78 Total: -17.28 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.75 Total: -25.83 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.63 Total: -22.91 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.06 -6.86 -38.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379365293.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.161 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds