Wall clock time and date at job start Thu Apr 9 2020 14:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48495 * 109.46927 * 89.99734 * 3 2 1 5 5 H 1.48494 * 109.46939 * 209.99778 * 3 2 1 6 6 H 1.48500 * 109.46687 * 329.99769 * 3 2 1 7 7 C 1.37879 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99759 * 186.34941 * 7 2 1 9 9 C 1.50697 * 120.00002 * 6.34880 * 7 2 1 10 10 O 1.45192 * 112.85038 * 293.84656 * 9 7 2 11 11 C 1.34231 * 117.00540 * 294.97094 * 10 9 7 12 12 O 1.20825 * 119.99872 * 2.83798 * 11 10 9 13 13 C 1.50704 * 120.00370 * 182.84471 * 11 10 9 14 14 C 1.52996 * 117.49652 * 248.62007 * 13 11 10 15 15 C 1.52998 * 117.49583 * 179.97438 * 13 11 10 16 16 C 1.53781 * 113.61273 * 162.54151 * 9 7 2 17 17 C 1.53776 * 87.08110 * 220.01814 * 16 9 7 18 18 C 1.53780 * 113.61175 * 65.04790 * 9 7 2 19 19 H 0.97004 * 119.99789 * 175.04169 * 1 2 3 20 20 H 1.08992 * 115.54819 * 34.32810 * 13 11 10 21 21 H 1.09001 * 117.49643 * 359.97438 * 14 13 11 22 22 H 1.08998 * 117.49928 * 145.01735 * 14 13 11 23 23 H 1.08999 * 117.49475 * 214.97584 * 15 13 11 24 24 H 1.08998 * 117.49993 * 359.97438 * 15 13 11 25 25 H 1.09002 * 113.61792 * 334.56868 * 16 9 7 26 26 H 1.09001 * 113.61297 * 105.47152 * 16 9 7 27 27 H 1.09003 * 113.61591 * 270.88259 * 17 16 9 28 28 H 1.09009 * 113.61260 * 139.98211 * 17 16 9 29 29 H 1.09002 * 113.61146 * 254.52348 * 18 9 7 30 30 H 1.08994 * 113.61691 * 25.43014 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4000 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1968 0.1040 9 6 1.2580 -2.4952 -0.1432 10 8 0.3944 -2.7779 0.9893 11 6 0.9910 -2.9862 2.1736 12 8 2.1908 -2.8836 2.2720 13 6 0.1642 -3.3482 3.3805 14 6 0.0594 -2.3123 4.5015 15 6 0.9031 -3.5735 4.7011 16 6 2.1538 -3.6779 -0.5475 17 6 1.0072 -4.1303 -1.4669 18 6 0.5620 -2.6588 -1.5047 19 1 -0.4850 -0.8370 -0.0726 20 1 -0.7115 -3.9661 3.1822 21 1 0.5888 -1.3691 4.3662 22 1 -0.8855 -2.2483 5.0409 23 1 0.5129 -4.3390 5.3718 24 1 1.9872 -3.4603 4.6969 25 1 3.0536 -3.3802 -1.0858 26 1 2.3576 -4.3704 0.2693 27 1 0.2907 -4.7910 -0.9787 28 1 1.3447 -4.5093 -2.4317 29 1 -0.5194 -2.5286 -1.4607 30 1 1.0265 -2.0825 -2.3046 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379365293.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:08:02 Heat of formation + Delta-G solvation = -63.850467 kcal Electronic energy + Delta-G solvation = -14444.600697 eV Core-core repulsion = 12012.704640 eV Total energy + Delta-G solvation = -2431.896057 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.104 amu Computer time = -0.09 seconds Orbital eigenvalues (eV) -41.52265 -39.43786 -37.12517 -36.06377 -34.54730 -28.20154 -26.70487 -26.21043 -24.22817 -23.39213 -21.38702 -20.28796 -19.43300 -18.20286 -17.16762 -16.75781 -15.86300 -15.73435 -15.53757 -15.37985 -14.45192 -14.33715 -13.38657 -13.23086 -12.79721 -12.53644 -12.41066 -12.30605 -12.06910 -11.95533 -11.87484 -11.60955 -11.53110 -11.21362 -10.89201 -10.58911 -10.17240 -8.64524 -6.43078 1.41770 1.46653 1.52803 1.73682 2.03539 2.49676 2.87456 3.14936 3.68086 3.75057 3.78339 3.92132 3.96665 4.08898 4.20710 4.47790 4.65221 4.70378 4.82934 4.85909 4.95083 4.96624 5.04373 5.15994 5.33712 5.52489 5.75472 6.07799 6.23710 6.57832 7.18389 7.40609 8.73270 Molecular weight = 210.10amu Principal moments of inertia in cm(-1) A = 0.024306 B = 0.014802 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.714570 B = 1891.155942 C = 2599.995824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.012 4.012 3 Si 1.108 2.892 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.610 4.610 8 H 0.034 0.966 9 C 0.183 3.817 10 O -0.363 6.363 11 C 0.477 3.523 12 O -0.542 6.542 13 C -0.190 4.190 14 C -0.146 4.146 15 C -0.128 4.128 16 C -0.143 4.143 17 C -0.120 4.120 18 C -0.108 4.108 19 H 0.270 0.730 20 H 0.152 0.848 21 H 0.071 0.929 22 H 0.142 0.858 23 H 0.148 0.852 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -6.803 4.422 8.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.930 3.070 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.647 4.647 8 H 0.053 0.947 9 C 0.148 3.852 10 O -0.280 6.280 11 C 0.321 3.679 12 O -0.432 6.432 13 C -0.209 4.209 14 C -0.183 4.183 15 C -0.165 4.165 16 C -0.181 4.181 17 C -0.157 4.157 18 C -0.146 4.146 19 H 0.081 0.919 20 H 0.169 0.831 21 H 0.090 0.910 22 H 0.160 0.840 23 H 0.165 0.835 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.412 -5.146 4.444 6.945 hybrid contribution 0.460 -1.426 -0.204 1.512 sum -0.952 -6.572 4.241 7.879 Atomic orbital electron populations 1.70772 1.07301 1.31585 1.45111 1.27108 0.96697 1.05717 0.91947 0.83058 0.74544 0.71977 0.77376 1.20961 1.19789 1.19701 1.22240 0.94060 0.92488 1.55925 0.94743 1.21170 0.88406 0.93493 0.82091 1.86348 1.43947 1.79381 1.18283 1.23076 0.87122 0.72697 0.84957 1.90520 1.17831 1.48773 1.86112 1.21971 1.03801 1.08649 0.86496 1.23061 1.03909 0.93384 0.97961 1.23139 0.99079 1.00093 0.94179 1.23269 0.98190 0.97588 0.99075 1.22832 0.97201 0.95551 1.00137 1.22880 0.99350 0.96751 0.95643 0.91866 0.83058 0.91005 0.84010 0.83462 0.89516 0.90251 0.93612 0.89859 0.89068 0.92836 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.08 13.52 21.45 0.29 -54.79 16 2 C -0.01 -0.70 5.36 84.66 0.45 -0.25 16 3 Si 1.11 51.96 29.91 68.60 2.05 54.01 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.61 -35.94 7.37 25.60 0.19 -35.75 16 8 H 0.03 2.13 7.82 -2.91 -0.02 2.11 16 9 C 0.18 9.53 0.11 -11.01 0.00 9.53 16 10 O -0.36 -18.79 9.22 -51.43 -0.47 -19.27 16 11 C 0.48 22.92 7.13 71.24 0.51 23.42 16 12 O -0.54 -29.19 14.37 21.97 0.32 -28.88 16 13 C -0.19 -6.55 6.30 -11.54 -0.07 -6.62 16 14 C -0.15 -4.34 10.24 30.61 0.31 -4.03 16 15 C -0.13 -3.48 10.05 30.61 0.31 -3.17 16 16 C -0.14 -6.50 6.90 31.12 0.21 -6.29 16 17 C -0.12 -4.50 8.03 31.12 0.25 -4.25 16 18 C -0.11 -4.95 6.55 31.12 0.20 -4.74 16 19 H 0.27 16.43 5.76 -92.71 -0.53 15.90 16 20 H 0.15 4.29 8.14 -2.39 -0.02 4.27 16 21 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 22 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 23 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.09 2.73 7.67 -2.39 -0.02 2.71 16 25 H 0.08 3.56 8.09 -2.39 -0.02 3.55 16 26 H 0.05 2.09 7.33 -2.39 -0.02 2.07 16 27 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 29 H 0.05 2.45 7.74 -2.39 -0.02 2.43 16 30 H 0.08 3.78 8.09 -2.39 -0.02 3.76 16 Total: -1.00 -71.38 257.73 5.90 -65.48 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.35 Total: 15.59 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 2.37 Total: -32.15 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.29 Total: -54.79 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.16 Total: -48.15 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.05 Total: 54.01 kcal Total: -71.38 5.90 -65.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379365293.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.630 kcal (2) G-P(sol) polarization free energy of solvation -71.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds