Wall clock time and date at job start Thu Apr 9 2020 14:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.73772 * 2 1 4 4 C 1.53297 * 109.71093 * 239.39716 * 2 1 3 5 5 N 1.46831 * 109.41182 * 186.52629 * 4 2 1 6 6 C 1.46896 * 110.99984 * 189.74595 * 5 4 2 7 7 C 1.52996 * 109.47431 * 169.99972 * 6 5 4 8 8 C 1.50696 * 109.47794 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99622 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00425 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00091 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00063 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47075 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47140 * 120.00042 * 12 10 8 15 15 H 1.48501 * 109.46957 * 239.99856 * 12 10 8 16 16 C 1.46823 * 111.56566 * 65.37528 * 5 4 2 17 17 C 1.53297 * 109.40153 * 294.61345 * 16 5 4 18 18 C 1.51435 * 109.72440 * 120.59932 * 2 1 3 19 19 O 1.20767 * 121.09970 * 348.72721 * 18 2 1 20 20 H 1.09000 * 109.46935 * 180.60340 * 1 2 3 21 21 H 1.09002 * 109.47037 * 300.60534 * 1 2 3 22 22 H 1.08995 * 109.47106 * 60.60671 * 1 2 3 23 23 H 1.09002 * 109.48492 * 66.53826 * 4 2 1 24 24 H 1.08999 * 109.48002 * 306.51049 * 4 2 1 25 25 H 1.08999 * 109.47019 * 289.99922 * 6 5 4 26 26 H 1.08997 * 109.47353 * 49.99716 * 6 5 4 27 27 H 1.08999 * 109.46978 * 299.99975 * 7 6 5 28 28 H 1.09007 * 109.46999 * 59.99532 * 7 6 5 29 29 H 0.96994 * 120.00172 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.48171 * 54.59440 * 16 5 4 31 31 H 1.09000 * 109.48472 * 174.61939 * 16 5 4 32 32 H 1.09003 * 109.71070 * 173.47933 * 17 16 5 33 33 H 1.08997 * 109.70903 * 294.10525 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0471 -0.7347 -1.2421 5 7 3.5069 -0.8678 -1.1580 6 6 4.0649 -1.3561 -2.4261 7 6 5.5905 -1.2462 -2.3880 8 6 6.1631 -1.7477 -3.6886 9 1 5.5046 -2.1084 -4.4650 10 6 7.5273 -1.7452 -3.8878 11 7 8.3291 -1.3056 -2.9425 12 14 8.2369 -2.3662 -5.5003 13 1 7.1323 -2.8019 -6.3921 14 1 9.0018 -1.2759 -6.1571 15 1 9.1408 -3.5140 -5.2340 16 6 3.9065 -1.7315 -0.0400 17 6 3.5161 -1.0642 1.2838 18 6 2.0411 -0.7256 1.2270 19 8 1.2970 -1.0248 2.1299 20 1 -0.3633 -1.0276 0.0108 21 1 -0.3633 0.5232 0.8845 22 1 -0.3633 0.5044 -0.8953 23 1 1.7846 -0.1678 -2.1354 24 1 1.5941 -1.7248 -1.2937 25 1 3.7793 -2.3979 -2.5715 26 1 3.6779 -0.7550 -3.2488 27 1 5.8762 -0.2044 -2.2425 28 1 5.9776 -1.8474 -1.5651 29 1 9.2888 -1.3034 -3.0828 30 1 3.4012 -2.6935 -0.1251 31 1 4.9855 -1.8841 -0.0660 32 1 3.7044 -1.7493 2.1104 33 1 4.0975 -0.1526 1.4214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229504296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:41 Heat of formation + Delta-G solvation = -51.178119 kcal Electronic energy + Delta-G solvation = -14073.313288 eV Core-core repulsion = 11712.373929 eV Total energy + Delta-G solvation = -2360.939359 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.97249 -37.36750 -33.86347 -32.78811 -31.45641 -29.06855 -26.27464 -24.52739 -22.65812 -22.26754 -19.94183 -18.83868 -16.58760 -15.82736 -15.61177 -15.01908 -14.73604 -14.52929 -14.11624 -13.70556 -12.90620 -12.79127 -12.29385 -12.24331 -11.81678 -11.72661 -11.48936 -11.18673 -11.04315 -10.96809 -10.73526 -10.51446 -9.92966 -9.44874 -9.25666 -9.11393 -8.36928 -7.87692 -6.03560 -4.06064 2.03583 3.29053 3.36822 3.40368 4.07441 4.25277 4.46961 4.86145 4.92290 5.10372 5.29290 5.32719 5.41969 5.49257 5.58514 5.72152 5.82252 5.91984 5.98882 6.10441 6.14191 6.14943 6.32244 6.43264 6.88467 7.32424 7.44999 7.59461 7.73056 7.82978 8.02365 8.38518 9.01228 9.58109 11.07827 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.065096 B = 0.006181 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.033668 B = 4528.773878 C = 4813.715632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 H 0.112 0.888 4 C 0.065 3.935 5 N -0.543 5.543 6 C 0.064 3.936 7 C 0.026 3.974 8 C -0.523 4.523 9 H 0.055 0.945 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.058 3.942 17 C -0.165 4.165 18 C 0.366 3.634 19 O -0.466 6.466 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.026 0.974 28 H 0.018 0.982 29 H 0.260 0.740 30 H 0.031 0.969 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.122 1.742 5.004 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 H 0.130 0.870 4 C -0.063 4.063 5 N -0.268 5.268 6 C -0.062 4.062 7 C -0.011 4.011 8 C -0.561 4.561 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.070 4.070 17 C -0.203 4.203 18 C 0.243 3.757 19 O -0.340 6.340 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.101 0.899 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.141 2.060 5.594 12.636 hybrid contribution 0.287 -1.078 -1.102 1.568 sum -10.854 0.982 4.492 11.787 Atomic orbital electron populations 1.21624 0.93426 1.02384 1.02109 1.21963 0.96859 1.01979 0.94942 0.87044 1.22092 0.88946 0.98577 0.96717 1.61879 1.08217 1.51083 1.05577 1.22336 0.99493 0.96512 0.87868 1.19136 0.87114 0.98016 0.96850 1.21215 0.91760 1.42202 1.00963 0.92715 1.24986 0.97234 0.95386 0.96659 1.69973 1.03519 1.46840 1.32882 0.86544 0.79114 0.78533 0.83842 1.19776 1.20968 1.21027 1.22105 1.03092 0.93088 0.88693 1.22415 0.94680 1.03701 0.99511 1.25055 0.90910 0.74047 0.85716 1.90351 1.60630 1.44448 1.38619 0.92572 0.92005 0.91889 0.89854 0.95016 0.95993 0.91736 0.95543 0.96384 0.93006 0.95095 0.88102 0.89375 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.63 37.16 0.32 -1.19 16 2 C -0.14 -1.73 3.17 -91.25 -0.29 -2.02 16 3 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.07 0.91 4.80 -3.71 -0.02 0.89 16 5 N -0.54 -9.18 4.58 -234.38 -1.07 -10.25 16 6 C 0.06 1.28 4.90 -3.83 -0.02 1.26 16 7 C 0.03 0.65 4.90 -27.89 -0.14 0.51 16 8 C -0.52 -14.39 9.11 -34.45 -0.31 -14.71 16 9 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 12 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.06 0.93 5.37 -3.71 -0.02 0.91 16 17 C -0.16 -2.25 6.35 -27.37 -0.17 -2.42 16 18 C 0.37 5.21 6.64 -28.31 -0.19 5.02 16 19 O -0.47 -7.68 16.94 5.99 0.10 -7.58 16 20 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 24 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 25 H 0.02 0.44 8.13 -51.93 -0.42 0.02 16 26 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.02 0.47 6.35 -51.93 -0.33 0.14 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 30 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.10 1.77 6.06 -51.93 -0.31 1.46 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 270.56 15.07 4.08 4.08 Total: -1.00 -29.91 270.56 -7.34 -37.25 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -5.23 Total: -3.96 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.93 Total: -10.20 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.34 Total: -35.82 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.10 Total: -7.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.91 -7.34 -37.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229504296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.930 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds