Wall clock time and date at job start Thu Apr 9 2020 14:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.73772 * 2 1 4 4 C 1.53297 * 109.71093 * 239.39716 * 2 1 3 5 5 N 1.46831 * 109.41182 * 186.52629 * 4 2 1 6 6 C 1.46896 * 110.99984 * 189.74595 * 5 4 2 7 7 C 1.52996 * 109.47431 * 169.99972 * 6 5 4 8 8 C 1.50696 * 109.47794 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99622 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00425 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00091 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00063 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47075 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47140 * 120.00042 * 12 10 8 15 15 H 1.48501 * 109.46957 * 239.99856 * 12 10 8 16 16 C 1.46823 * 111.56566 * 65.37528 * 5 4 2 17 17 C 1.53297 * 109.40153 * 294.61345 * 16 5 4 18 18 C 1.51435 * 109.72440 * 120.59932 * 2 1 3 19 19 O 1.20767 * 121.09970 * 348.72721 * 18 2 1 20 20 H 1.09000 * 109.46935 * 180.60340 * 1 2 3 21 21 H 1.09002 * 109.47037 * 300.60534 * 1 2 3 22 22 H 1.08995 * 109.47106 * 60.60671 * 1 2 3 23 23 H 1.09002 * 109.48492 * 66.53826 * 4 2 1 24 24 H 1.08999 * 109.48002 * 306.51049 * 4 2 1 25 25 H 1.08999 * 109.47019 * 289.99922 * 6 5 4 26 26 H 1.08997 * 109.47353 * 49.99716 * 6 5 4 27 27 H 1.08999 * 109.46978 * 299.99975 * 7 6 5 28 28 H 1.09007 * 109.46999 * 59.99532 * 7 6 5 29 29 H 0.96994 * 120.00172 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.48171 * 54.59440 * 16 5 4 31 31 H 1.09000 * 109.48472 * 174.61939 * 16 5 4 32 32 H 1.09003 * 109.71070 * 173.47933 * 17 16 5 33 33 H 1.08997 * 109.70903 * 294.10525 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 6 2.0471 -0.7347 -1.2421 5 7 3.5069 -0.8678 -1.1580 6 6 4.0649 -1.3561 -2.4261 7 6 5.5905 -1.2462 -2.3880 8 6 6.1631 -1.7477 -3.6886 9 1 5.5046 -2.1084 -4.4650 10 6 7.5273 -1.7452 -3.8878 11 7 8.3291 -1.3056 -2.9425 12 14 8.2369 -2.3662 -5.5003 13 1 7.1323 -2.8019 -6.3921 14 1 9.0018 -1.2759 -6.1571 15 1 9.1408 -3.5140 -5.2340 16 6 3.9065 -1.7315 -0.0400 17 6 3.5161 -1.0642 1.2838 18 6 2.0411 -0.7256 1.2270 19 8 1.2970 -1.0248 2.1299 20 1 -0.3633 -1.0276 0.0108 21 1 -0.3633 0.5232 0.8845 22 1 -0.3633 0.5044 -0.8953 23 1 1.7846 -0.1678 -2.1354 24 1 1.5941 -1.7248 -1.2937 25 1 3.7793 -2.3979 -2.5715 26 1 3.6779 -0.7550 -3.2488 27 1 5.8762 -0.2044 -2.2425 28 1 5.9776 -1.8474 -1.5651 29 1 9.2888 -1.3034 -3.0828 30 1 3.4012 -2.6935 -0.1251 31 1 4.9855 -1.8841 -0.0660 32 1 3.7044 -1.7493 2.1104 33 1 4.0975 -0.1526 1.4214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229504296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:41 Heat of formation + Delta-G solvation = -70.226113 kcal Electronic energy + Delta-G solvation = -14074.139271 eV Core-core repulsion = 11712.373929 eV Total energy + Delta-G solvation = -2361.765342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.15618 -38.70971 -35.54080 -34.27357 -32.89858 -30.74275 -27.49677 -26.25887 -23.86664 -23.73147 -21.55301 -19.97025 -18.58041 -17.09429 -16.81859 -16.56376 -16.22266 -15.93987 -15.48925 -15.10774 -14.44372 -14.16767 -13.85330 -13.38716 -13.16875 -13.01450 -12.84491 -12.74618 -12.64964 -12.35268 -12.11691 -11.97227 -11.74628 -11.27999 -11.16355 -10.53121 -10.35903 -9.25469 -8.17724 -6.27961 0.89413 1.42329 1.43174 1.55651 2.42108 2.88726 3.10390 3.16597 3.77075 3.86745 3.95321 4.16644 4.28207 4.41792 4.48923 4.56215 4.72457 4.74106 4.75951 4.93590 4.95730 5.03312 5.09850 5.14164 5.26390 5.49382 5.69465 5.79768 6.07420 6.23523 6.32203 6.47357 6.89867 7.41183 8.94416 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.065096 B = 0.006181 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.033668 B = 4528.773878 C = 4813.715632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.132 4.132 3 H 0.124 0.876 4 C 0.067 3.933 5 N -0.550 5.550 6 C 0.080 3.920 7 C 0.033 3.967 8 C -0.542 4.542 9 H 0.060 0.940 10 C 0.003 3.997 11 N -0.931 5.931 12 Si 0.963 3.037 13 H -0.262 1.262 14 H -0.279 1.279 15 H -0.280 1.280 16 C 0.060 3.940 17 C -0.159 4.159 18 C 0.369 3.631 19 O -0.489 6.489 20 H 0.049 0.951 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.034 0.966 25 H 0.021 0.979 26 H 0.071 0.929 27 H -0.003 1.003 28 H -0.002 1.002 29 H 0.263 0.737 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 1.821 4.172 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 H 0.142 0.858 4 C -0.061 4.061 5 N -0.275 5.275 6 C -0.047 4.047 7 C -0.005 4.005 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.195 4.195 11 N -0.571 5.571 12 Si 0.788 3.212 13 H -0.186 1.186 14 H -0.205 1.205 15 H -0.206 1.206 16 C -0.068 4.068 17 C -0.197 4.197 18 C 0.247 3.753 19 O -0.365 6.365 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.103 0.897 23 H 0.116 0.884 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.255 2.141 4.762 13.321 hybrid contribution 0.626 -1.091 -0.799 1.490 sum -11.629 1.050 3.963 12.331 Atomic orbital electron populations 1.21607 0.91926 1.02328 1.03233 1.21966 0.98005 1.02046 0.93106 0.85807 1.22171 0.86599 0.99234 0.98128 1.61789 1.10405 1.50992 1.04306 1.21969 0.96148 0.96787 0.89769 1.18975 0.90691 0.95492 0.95304 1.21666 0.92342 1.42053 1.01999 0.92186 1.25902 0.97770 0.95530 1.00318 1.70100 1.03894 1.48057 1.35093 0.85435 0.78435 0.77954 0.79422 1.18594 1.20481 1.20586 1.22036 1.01669 0.93511 0.89592 1.22379 0.94793 1.04162 0.98401 1.25273 0.90703 0.73446 0.85910 1.90352 1.61012 1.45493 1.39620 0.93201 0.91966 0.89730 0.88355 0.94750 0.96036 0.91014 0.98448 0.98349 0.92827 0.94863 0.90481 0.88341 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.63 71.98 0.62 -1.95 16 2 C -0.13 -3.00 3.17 -11.20 -0.04 -3.03 16 3 H 0.12 2.56 8.14 -2.38 -0.02 2.54 16 4 C 0.07 1.70 4.80 86.42 0.42 2.12 16 5 N -0.55 -18.09 4.58 -895.43 -4.10 -22.19 16 6 C 0.08 3.17 4.90 86.30 0.42 3.59 16 7 C 0.03 1.67 4.90 29.85 0.15 1.81 16 8 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 9 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 10 C 0.00 0.16 5.46 84.65 0.46 0.62 16 11 N -0.93 -55.68 13.29 21.44 0.28 -55.39 16 12 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 13 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 16 C 0.06 1.90 5.37 86.42 0.46 2.36 16 17 C -0.16 -4.18 6.35 30.18 0.19 -3.99 16 18 C 0.37 9.88 6.64 29.57 0.20 10.07 16 19 O -0.49 -15.41 16.94 -1.47 -0.02 -15.43 16 20 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.06 1.21 8.06 -2.39 -0.02 1.20 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.10 2.25 7.94 -2.39 -0.02 2.23 16 24 H 0.03 0.88 8.10 -2.39 -0.02 0.86 16 25 H 0.02 0.84 8.13 -2.39 -0.02 0.82 16 26 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 27 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.00 -0.09 6.35 -2.38 -0.02 -0.11 16 29 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.03 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.08 2.80 6.06 -2.39 -0.01 2.78 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -63.47 270.56 2.37 -61.10 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.07 Total: 4.65 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 3.12 Total: -18.16 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -3.81 Total: -77.58 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.02 Total: -15.43 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -63.47 2.37 -61.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229504296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.131 kcal (2) G-P(sol) polarization free energy of solvation -63.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds