Wall clock time and date at job start Thu Apr 9 2020 14:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.05603 * 2 1 4 4 C 1.54266 * 110.02909 * 121.41642 * 2 1 3 5 5 C 1.54889 * 104.19640 * 142.89395 * 4 2 1 6 6 C 1.54896 * 102.74707 * 322.05478 * 5 4 2 7 7 C 1.53872 * 110.02925 * 238.57998 * 2 1 3 8 8 H 1.09001 * 110.07551 * 121.41467 * 7 2 1 9 9 C 1.50703 * 110.03346 * 0.02562 * 7 2 1 10 10 O 1.21289 * 120.00175 * 267.35785 * 9 7 2 11 11 N 1.34771 * 119.99678 * 87.36745 * 9 7 2 12 12 C 1.46498 * 120.00146 * 5.16000 * 11 9 7 13 13 C 1.37102 * 119.99837 * 185.16461 * 11 9 7 14 14 H 1.07997 * 119.99795 * 336.83217 * 13 11 9 15 15 C 1.38945 * 119.99822 * 156.84077 * 13 11 9 16 16 N 1.31419 * 120.00355 * 343.00583 * 15 13 11 17 17 Si 1.86801 * 119.99892 * 163.01161 * 15 13 11 18 18 H 1.48502 * 109.47322 * 265.01714 * 17 15 13 19 19 H 1.48500 * 109.47091 * 25.01768 * 17 15 13 20 20 H 1.48500 * 109.47343 * 145.01763 * 17 15 13 21 21 H 1.08999 * 109.47513 * 181.59016 * 1 2 3 22 22 H 1.09002 * 109.46906 * 301.59272 * 1 2 3 23 23 H 1.09002 * 109.46819 * 61.58809 * 1 2 3 24 24 H 1.08999 * 110.48913 * 24.21400 * 4 2 1 25 25 H 1.08999 * 110.59530 * 261.62707 * 4 2 1 26 26 H 1.08998 * 110.75336 * 203.74136 * 5 4 2 27 27 H 1.08998 * 110.91853 * 80.44345 * 5 4 2 28 28 H 1.09004 * 110.48497 * 279.26454 * 6 5 4 29 29 H 1.08993 * 110.48279 * 156.62428 * 6 5 4 30 30 H 1.09002 * 109.47180 * 265.90187 * 12 11 9 31 31 H 1.08998 * 109.47155 * 25.90635 * 12 11 9 32 32 H 1.09000 * 109.47245 * 145.90589 * 12 11 9 33 33 H 0.97002 * 119.99846 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3136 -1.5008 0.7192 6 6 2.8873 -1.9408 -0.7035 7 6 2.0570 -0.7536 -1.2337 8 1 2.6865 -0.0960 -1.8332 9 6 0.9036 -1.2587 -2.0617 10 8 0.4702 -2.3768 -1.8798 11 7 0.3539 -0.4681 -3.0046 12 6 0.9476 0.8376 -3.3029 13 6 -0.7610 -0.8857 -3.6846 14 1 -0.9846 -1.9396 -3.7594 15 6 -1.6030 0.0471 -4.2775 16 7 -1.5378 1.3107 -3.9223 17 14 -2.8278 -0.4950 -5.5796 18 1 -2.2383 -0.2944 -6.9278 19 1 -3.1494 -1.9322 -5.3889 20 1 -4.0693 0.3105 -5.4574 21 1 -0.3634 -1.0272 0.0285 22 1 -0.3633 0.5384 0.8754 23 1 -0.3633 0.4890 -0.9039 24 1 1.3142 -1.4660 1.5967 25 1 2.3293 -0.0553 2.0271 26 1 3.5323 -2.3679 1.3424 27 1 4.1730 -0.8318 0.6754 28 1 2.2770 -2.8427 -0.6570 29 1 3.7636 -2.1039 -1.3308 30 1 0.4465 1.6072 -2.7160 31 1 2.0078 0.8208 -3.0506 32 1 0.8302 1.0561 -4.3643 33 1 -2.1259 1.9617 -4.3360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230171039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:53 Heat of formation + Delta-G solvation = -43.903380 kcal Electronic energy + Delta-G solvation = -14924.374620 eV Core-core repulsion = 12563.750718 eV Total energy + Delta-G solvation = -2360.623903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42999 -36.57440 -34.50947 -31.63100 -30.59224 -28.72321 -26.14990 -24.72628 -24.12074 -20.75807 -20.13797 -17.65134 -16.72485 -16.29666 -15.19906 -14.74129 -14.36622 -13.87030 -13.59512 -13.11240 -12.35705 -12.19286 -11.73247 -11.44656 -11.32162 -11.21756 -10.98364 -10.77791 -10.66637 -10.34701 -10.31859 -10.25665 -10.14196 -10.09062 -9.76770 -8.97549 -8.21126 -7.56702 -6.25763 -3.80101 3.19337 3.28600 3.34426 3.98363 4.19853 4.89243 5.01124 5.05114 5.23385 5.32299 5.72781 5.86468 5.89903 5.97444 6.00917 6.05063 6.14854 6.27621 6.29884 6.43568 6.54478 6.58359 6.69031 6.83827 6.88311 6.93826 7.11334 7.28982 7.63840 8.22904 8.57410 9.27418 9.52244 10.09760 10.78330 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.053997 B = 0.009395 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.420221 B = 2979.555982 C = 3106.704610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.074 4.074 3 H 0.067 0.933 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.109 4.109 8 H 0.079 0.921 9 C 0.466 3.534 10 O -0.590 6.590 11 N -0.450 5.450 12 C 0.109 3.891 13 C -0.307 4.307 14 H 0.097 0.903 15 C 0.031 3.969 16 N -0.880 5.880 17 Si 0.920 3.080 18 H -0.280 1.280 19 H -0.270 1.270 20 H -0.285 1.285 21 H 0.061 0.939 22 H 0.041 0.959 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 1.031 5.409 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.093 4.093 3 H 0.086 0.914 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.131 4.131 8 H 0.097 0.903 9 C 0.254 3.746 10 O -0.475 6.475 11 N -0.169 5.169 12 C -0.034 4.034 13 C -0.435 4.435 14 H 0.115 0.885 15 C -0.172 4.172 16 N -0.519 5.519 17 Si 0.747 3.253 18 H -0.206 1.206 19 H -0.194 1.194 20 H -0.211 1.211 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.756 0.679 5.408 8.680 hybrid contribution -0.641 0.155 -0.769 1.013 sum 6.115 0.834 4.640 7.721 Atomic orbital electron populations 1.22036 0.94219 1.02774 1.02169 1.21532 0.96640 0.98096 0.93062 0.91423 1.22440 0.97294 0.98811 0.96983 1.22464 0.97393 0.99410 0.96764 1.22322 0.98641 0.99053 0.94974 1.21983 0.96696 0.97728 0.96663 0.90297 1.19830 0.86497 0.86705 0.81525 1.90472 1.66100 1.20649 1.70279 1.43561 1.25211 1.15919 1.32167 1.21512 0.93467 0.86588 1.01875 1.19612 1.00702 0.94084 1.29084 0.88542 1.25271 0.97751 0.95208 0.98963 1.70012 1.39195 1.02000 1.40716 0.86001 0.79550 0.78916 0.80789 1.20573 1.19417 1.21085 0.91973 0.93993 0.90400 0.91529 0.92293 0.92063 0.92066 0.89660 0.92442 0.92032 0.95157 0.92255 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 7.89 37.16 0.29 -2.81 16 2 C -0.07 -1.29 3.50 -89.50 -0.31 -1.61 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.12 -1.75 6.36 -25.07 -0.16 -1.91 16 5 C -0.12 -1.71 6.91 -24.73 -0.17 -1.88 16 6 C -0.11 -1.92 6.30 -25.07 -0.16 -2.08 16 7 C -0.11 -2.10 2.68 -90.65 -0.24 -2.34 16 8 H 0.08 1.41 5.94 -51.93 -0.31 1.10 16 9 C 0.47 11.43 4.57 -10.99 -0.05 11.38 16 10 O -0.59 -16.47 14.81 5.55 0.08 -16.39 16 11 N -0.45 -11.59 2.27 -122.20 -0.28 -11.87 16 12 C 0.11 2.47 8.24 59.85 0.49 2.96 16 13 C -0.31 -8.65 9.27 -14.93 -0.14 -8.78 16 14 H 0.10 2.88 7.41 -52.49 -0.39 2.49 16 15 C 0.03 0.83 5.01 -17.47 -0.09 0.74 16 16 N -0.88 -23.57 10.97 55.50 0.61 -22.96 16 17 Si 0.92 21.04 29.59 -169.99 -5.03 16.01 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H 0.06 1.39 7.15 -51.93 -0.37 1.02 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.08 1.82 6.22 -51.93 -0.32 1.49 16 24 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.68 6.81 -51.93 -0.35 1.32 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.44 7.04 -51.93 -0.37 1.07 16 31 H 0.03 0.58 5.77 -51.93 -0.30 0.28 16 32 H 0.06 1.39 7.39 -51.93 -0.38 1.01 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 258.40 15.07 3.89 3.89 Total: -1.00 -29.96 258.40 -6.13 -36.09 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.87 Total: 1.53 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.53 Total: -6.32 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.33 Total: -34.83 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.08 Total: -16.39 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.96 -6.13 -36.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.812 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds