Wall clock time and date at job start Thu Apr 9 2020 14:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.05603 * 2 1 4 4 C 1.54266 * 110.02909 * 121.41642 * 2 1 3 5 5 C 1.54889 * 104.19640 * 142.89395 * 4 2 1 6 6 C 1.54896 * 102.74707 * 322.05478 * 5 4 2 7 7 C 1.53872 * 110.02925 * 238.57998 * 2 1 3 8 8 H 1.09001 * 110.07551 * 121.41467 * 7 2 1 9 9 C 1.50703 * 110.03346 * 0.02562 * 7 2 1 10 10 O 1.21289 * 120.00175 * 267.35785 * 9 7 2 11 11 N 1.34771 * 119.99678 * 87.36745 * 9 7 2 12 12 C 1.46498 * 120.00146 * 5.16000 * 11 9 7 13 13 C 1.37102 * 119.99837 * 185.16461 * 11 9 7 14 14 H 1.07997 * 119.99795 * 336.83217 * 13 11 9 15 15 C 1.38945 * 119.99822 * 156.84077 * 13 11 9 16 16 N 1.31419 * 120.00355 * 343.00583 * 15 13 11 17 17 Si 1.86801 * 119.99892 * 163.01161 * 15 13 11 18 18 H 1.48502 * 109.47322 * 265.01714 * 17 15 13 19 19 H 1.48500 * 109.47091 * 25.01768 * 17 15 13 20 20 H 1.48500 * 109.47343 * 145.01763 * 17 15 13 21 21 H 1.08999 * 109.47513 * 181.59016 * 1 2 3 22 22 H 1.09002 * 109.46906 * 301.59272 * 1 2 3 23 23 H 1.09002 * 109.46819 * 61.58809 * 1 2 3 24 24 H 1.08999 * 110.48913 * 24.21400 * 4 2 1 25 25 H 1.08999 * 110.59530 * 261.62707 * 4 2 1 26 26 H 1.08998 * 110.75336 * 203.74136 * 5 4 2 27 27 H 1.08998 * 110.91853 * 80.44345 * 5 4 2 28 28 H 1.09004 * 110.48497 * 279.26454 * 6 5 4 29 29 H 1.08993 * 110.48279 * 156.62428 * 6 5 4 30 30 H 1.09002 * 109.47180 * 265.90187 * 12 11 9 31 31 H 1.08998 * 109.47155 * 25.90635 * 12 11 9 32 32 H 1.09000 * 109.47245 * 145.90589 * 12 11 9 33 33 H 0.97002 * 119.99846 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3136 -1.5008 0.7192 6 6 2.8873 -1.9408 -0.7035 7 6 2.0570 -0.7536 -1.2337 8 1 2.6865 -0.0960 -1.8332 9 6 0.9036 -1.2587 -2.0617 10 8 0.4702 -2.3768 -1.8798 11 7 0.3539 -0.4681 -3.0046 12 6 0.9476 0.8376 -3.3029 13 6 -0.7610 -0.8857 -3.6846 14 1 -0.9846 -1.9396 -3.7594 15 6 -1.6030 0.0471 -4.2775 16 7 -1.5378 1.3107 -3.9223 17 14 -2.8278 -0.4950 -5.5796 18 1 -2.2383 -0.2944 -6.9278 19 1 -3.1494 -1.9322 -5.3889 20 1 -4.0693 0.3105 -5.4574 21 1 -0.3634 -1.0272 0.0285 22 1 -0.3633 0.5384 0.8754 23 1 -0.3633 0.4890 -0.9039 24 1 1.3142 -1.4660 1.5967 25 1 2.3293 -0.0553 2.0271 26 1 3.5323 -2.3679 1.3424 27 1 4.1730 -0.8318 0.6754 28 1 2.2770 -2.8427 -0.6570 29 1 3.7636 -2.1039 -1.3308 30 1 0.4465 1.6072 -2.7160 31 1 2.0078 0.8208 -3.0506 32 1 0.8302 1.0561 -4.3643 33 1 -2.1259 1.9617 -4.3360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230171039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:53 Heat of formation + Delta-G solvation = -61.887238 kcal Electronic energy + Delta-G solvation = -14925.154459 eV Core-core repulsion = 12563.750718 eV Total energy + Delta-G solvation = -2361.403741 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14510 -38.18107 -36.53204 -33.65345 -32.04704 -30.21842 -28.04822 -26.46049 -25.80835 -22.39838 -21.42496 -19.41079 -18.74438 -17.99202 -16.80347 -16.55467 -16.13794 -15.59223 -15.21606 -14.52317 -14.11727 -13.91257 -13.43603 -13.27668 -13.13647 -12.89396 -12.73449 -12.47179 -12.30730 -12.12656 -11.84256 -11.64174 -11.55989 -11.42143 -11.26761 -11.00380 -10.18149 -9.60833 -8.31394 -5.94315 1.35348 1.39203 1.51363 2.09314 2.29155 3.09203 3.12961 3.67975 3.77618 3.90377 4.27563 4.42330 4.48672 4.51091 4.67032 4.71444 4.81137 4.85144 4.97846 5.02340 5.04790 5.14342 5.28255 5.30513 5.34745 5.47012 5.47569 5.53039 5.60228 6.14059 6.53784 7.21930 7.53822 8.11774 8.70646 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.053997 B = 0.009395 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.420221 B = 2979.555982 C = 3106.704610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 H 0.096 0.904 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.107 4.107 8 H 0.100 0.900 9 C 0.458 3.542 10 O -0.636 6.636 11 N -0.464 5.464 12 C 0.120 3.880 13 C -0.345 4.345 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.891 5.891 17 Si 0.982 3.018 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.274 1.274 21 H 0.025 0.975 22 H 0.067 0.933 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.663 2.371 6.157 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 H 0.114 0.886 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.153 4.153 7 C -0.128 4.128 8 H 0.118 0.882 9 C 0.249 3.751 10 O -0.524 6.524 11 N -0.183 5.183 12 C -0.023 4.023 13 C -0.473 4.473 14 H 0.082 0.918 15 C -0.202 4.202 16 N -0.529 5.529 17 Si 0.806 3.194 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.199 1.199 21 H 0.044 0.956 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.344 2.051 6.157 10.571 hybrid contribution -1.170 -0.269 -0.986 1.553 sum 7.174 1.782 5.171 9.022 Atomic orbital electron populations 1.21903 0.96777 1.00212 1.01410 1.21631 0.94292 0.99813 0.93469 0.88606 1.22436 0.97273 0.98987 0.96497 1.22450 0.97678 1.00456 0.94134 1.22338 0.98310 0.96751 0.97862 1.22085 0.94857 0.99101 0.96791 0.88239 1.20830 0.87346 0.85864 0.81106 1.90433 1.67855 1.22733 1.71386 1.43791 1.24933 1.17022 1.32504 1.21458 0.95383 0.84823 1.00668 1.19493 1.02960 0.93128 1.31747 0.91758 1.25973 0.98957 0.95212 1.00019 1.70073 1.39560 1.02485 1.40817 0.85090 0.77665 0.77968 0.78637 1.19097 1.20366 1.19911 0.95586 0.91448 0.94116 0.93180 0.88916 0.90472 0.89082 0.93170 0.90713 0.93058 0.91247 0.93753 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.86 7.89 71.98 0.57 -5.29 16 2 C -0.07 -2.38 3.50 -10.07 -0.04 -2.41 16 3 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 4 C -0.11 -3.02 6.36 31.67 0.20 -2.82 16 5 C -0.11 -2.62 6.91 31.89 0.22 -2.40 16 6 C -0.11 -3.73 6.30 31.67 0.20 -3.53 16 7 C -0.11 -3.96 2.68 -10.81 -0.03 -3.99 16 8 H 0.10 3.23 5.94 -2.39 -0.01 3.22 16 9 C 0.46 23.06 4.57 87.66 0.40 23.47 16 10 O -0.64 -37.42 14.81 -3.06 -0.05 -37.47 16 11 N -0.46 -24.55 2.27 -658.91 -1.49 -26.05 16 12 C 0.12 5.37 8.24 127.77 1.05 6.43 16 13 C -0.35 -20.26 9.27 84.04 0.78 -19.48 16 14 H 0.06 4.09 7.41 -2.91 -0.02 4.07 16 15 C 0.00 0.03 5.01 84.92 0.43 0.45 16 16 N -0.89 -47.93 10.97 21.66 0.24 -47.69 16 17 Si 0.98 43.64 29.59 68.60 2.03 45.67 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H 0.02 1.19 7.15 -2.39 -0.02 1.17 16 22 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.04 1.92 6.22 -2.39 -0.01 1.91 16 24 H 0.05 1.48 7.83 -2.39 -0.02 1.46 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.99 6.81 -2.39 -0.02 1.98 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 2.39 7.04 -2.39 -0.02 2.37 16 31 H 0.07 2.50 5.77 -2.39 -0.01 2.49 16 32 H 0.04 2.08 7.39 -2.39 -0.02 2.06 16 33 H 0.27 13.70 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -68.31 258.40 5.59 -62.72 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.08 Total: 12.40 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 3.78 Total: -9.58 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.26 Total: -73.74 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.05 Total: -37.47 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.31 5.59 -62.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.829 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds