Wall clock time and date at job start Thu Apr 9 2020 14:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.48565 * 2 1 4 4 C 1.53295 * 109.48754 * 239.95171 * 2 1 3 5 5 C 1.51437 * 108.24533 * 186.23084 * 4 2 1 6 6 O 1.20754 * 121.11135 * 229.00536 * 5 4 2 7 7 C 1.51433 * 117.77650 * 49.02494 * 5 4 2 8 8 H 1.09007 * 109.71029 * 70.66014 * 7 5 4 9 9 C 1.53005 * 109.70759 * 191.28526 * 7 5 4 10 10 C 1.53301 * 108.24688 * 310.97401 * 7 5 4 11 11 H 1.08997 * 109.49740 * 173.78020 * 10 7 5 12 12 C 1.53000 * 109.47854 * 293.81955 * 10 7 5 13 13 C 1.50708 * 109.46973 * 184.92385 * 12 10 7 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 N 1.46824 * 109.39790 * 53.79128 * 10 7 5 22 22 H 1.08998 * 109.46921 * 299.98018 * 1 2 3 23 23 H 1.08999 * 109.46839 * 59.97590 * 1 2 3 24 24 H 1.08994 * 109.46997 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.70291 * 305.91662 * 4 2 1 26 26 H 1.08996 * 109.71261 * 66.53849 * 4 2 1 27 27 H 1.08998 * 109.46782 * 178.78797 * 9 7 5 28 28 H 1.08997 * 109.47109 * 298.78503 * 9 7 5 29 29 H 1.08993 * 109.47081 * 58.78569 * 9 7 5 30 30 H 1.08994 * 109.48028 * 64.92443 * 12 10 7 31 31 H 1.09000 * 109.47206 * 304.92297 * 12 10 7 32 32 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 33 33 H 1.00902 * 111.00291 * 58.97937 * 21 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0414 -0.7236 -1.2509 5 6 3.5474 -0.8437 -1.1468 6 8 4.2636 -0.5270 -2.0659 7 6 4.1251 -1.3748 0.1484 8 1 3.9039 -2.4381 0.2409 9 6 5.6398 -1.1588 0.1645 10 6 3.4814 -0.6097 1.3104 11 1 3.7992 -1.0494 2.2558 12 6 3.9148 0.8566 1.2582 13 6 3.3809 1.5816 2.4668 14 1 2.7918 1.0495 3.1990 15 6 3.6455 2.9238 2.6382 16 7 3.1800 3.5564 3.6931 17 14 4.6651 3.8439 1.3721 18 1 6.1011 3.7679 1.7428 19 1 4.2389 5.2659 1.3319 20 1 4.4659 3.2296 0.0348 21 7 2.0198 -0.6926 1.1986 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5142 -0.8898 24 1 -0.3633 -1.0276 -0.0005 25 1 1.5965 -1.7171 -1.3085 26 1 1.7789 -0.1507 -2.1402 27 1 6.0486 -1.5227 1.1072 28 1 6.0934 -1.7043 -0.6629 29 1 5.8563 -0.0956 0.0610 30 1 3.5214 1.3200 0.3535 31 1 5.0033 0.9138 1.2518 32 1 3.3658 4.5007 3.8135 33 1 1.7097 -1.6527 1.2133 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238414000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:54 Heat of formation + Delta-G solvation = -68.260948 kcal Electronic energy + Delta-G solvation = -14890.082922 eV Core-core repulsion = 12528.402796 eV Total energy + Delta-G solvation = -2361.680126 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.49199 -38.57693 -35.47680 -34.47637 -31.78745 -30.35007 -29.38624 -25.93629 -24.81506 -22.69458 -21.68605 -19.51840 -18.93130 -16.98722 -16.92148 -16.64750 -16.15087 -15.96367 -15.17596 -14.77219 -14.50281 -14.24329 -13.63143 -13.48001 -13.17888 -12.90695 -12.86192 -12.81198 -12.66168 -12.53920 -12.05068 -11.92138 -11.50688 -11.38654 -11.08961 -10.69525 -10.35581 -9.13250 -8.21901 -6.19377 0.93134 1.28702 1.32257 1.40919 2.35142 3.04294 3.11214 3.35845 3.79370 3.82337 4.03723 4.09787 4.22210 4.46390 4.55307 4.62914 4.76729 4.83315 4.85448 4.94977 4.98138 5.04509 5.12078 5.26471 5.36111 5.44474 5.50555 5.71548 6.25520 6.42053 6.47192 6.81942 6.91223 7.41431 8.95027 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.012969 C = 0.011013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.247343 B = 2158.513989 C = 2541.800309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.088 3.912 3 H 0.055 0.945 4 C -0.194 4.194 5 C 0.360 3.640 6 O -0.499 6.499 7 C -0.171 4.171 8 H 0.136 0.864 9 C -0.138 4.138 10 C 0.121 3.879 11 H 0.090 0.910 12 C -0.013 4.013 13 C -0.485 4.485 14 H 0.049 0.951 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.926 3.074 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.669 5.669 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.133 0.867 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.006 0.994 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -12.007 -9.034 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 H 0.074 0.926 4 C -0.233 4.233 5 C 0.239 3.761 6 O -0.375 6.375 7 C -0.191 4.191 8 H 0.154 0.846 9 C -0.195 4.195 10 C 0.011 3.989 11 H 0.108 0.892 12 C -0.050 4.050 13 C -0.524 4.524 14 H 0.067 0.933 15 C -0.188 4.188 16 N -0.592 5.592 17 Si 0.752 3.248 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.190 1.190 21 N -0.299 5.299 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.151 0.849 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.034 -11.131 -9.000 14.458 hybrid contribution 0.792 0.496 -0.862 1.271 sum -1.243 -10.635 -9.862 14.557 Atomic orbital electron populations 1.21692 0.91982 1.03214 1.01983 1.21573 0.97007 0.97790 0.85858 0.92626 1.23162 0.93130 1.05258 1.01750 1.25420 0.92495 0.70979 0.87252 1.90332 1.65148 1.40081 1.41934 1.22804 0.97948 1.03276 0.95119 0.84627 1.21661 0.93739 1.01406 1.02738 1.21416 0.86693 0.94957 0.95860 0.89155 1.19817 0.95876 0.93760 0.95563 1.21238 1.30681 0.93995 1.06456 0.93304 1.25741 0.97280 0.98886 0.96874 1.70036 1.48563 1.10437 1.30172 0.86028 0.79959 0.78133 0.80678 1.19355 1.21106 1.19029 1.60144 1.10026 1.20318 1.39422 0.93261 0.91249 0.90186 0.84898 0.89252 0.90240 0.91955 0.94423 0.97636 0.96174 0.92940 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.50 71.98 0.68 -2.53 16 2 C 0.09 2.69 2.74 45.03 0.12 2.81 16 3 H 0.06 2.23 5.86 -2.38 -0.01 2.21 16 4 C -0.19 -4.90 5.60 30.18 0.17 -4.73 16 5 C 0.36 11.35 5.79 29.57 0.17 11.52 16 6 O -0.50 -19.04 16.94 -1.43 -0.02 -19.07 16 7 C -0.17 -4.85 2.92 -11.20 -0.03 -4.88 16 8 H 0.14 2.78 8.14 -2.38 -0.02 2.76 16 9 C -0.14 -4.10 8.10 71.98 0.58 -3.52 16 10 C 0.12 4.22 2.65 45.03 0.12 4.34 16 11 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 12 C -0.01 -0.59 2.57 29.85 0.08 -0.52 16 13 C -0.49 -27.24 9.39 25.60 0.24 -27.00 16 14 H 0.05 3.01 7.99 -2.92 -0.02 2.99 16 15 C 0.01 0.48 5.47 84.65 0.46 0.94 16 16 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 17 Si 0.93 46.07 27.47 68.60 1.88 47.95 16 18 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.27 -12.95 6.54 99.48 0.65 -12.30 16 21 N -0.67 -21.14 5.98 -468.75 -2.80 -23.95 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.13 2.32 8.14 -2.38 -0.02 2.30 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 1.71 8.06 -2.39 -0.02 1.69 16 29 H 0.04 1.33 6.25 -2.39 -0.01 1.32 16 30 H 0.01 0.27 4.51 -2.39 -0.01 0.26 16 31 H 0.02 0.94 5.50 -2.39 -0.01 0.92 16 32 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.35 8.24 8.76 -89.69 -0.79 7.46 16 Total: -1.00 -69.65 260.20 2.21 -67.44 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.26 Total: 10.71 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 2.60 Total: -23.56 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.50 Total: -83.48 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.02 Total: -19.07 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.95 kcal Total: -69.65 2.21 -67.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238414000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.826 kcal (2) G-P(sol) polarization free energy of solvation -69.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds