Wall clock time and date at job start Thu Apr 9 2020 14:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47552 * 2 1 4 4 C 1.50704 * 109.47325 * 239.99663 * 2 1 3 5 5 H 1.07998 * 120.00085 * 240.00363 * 4 2 1 6 6 C 1.37872 * 119.99833 * 59.99566 * 4 2 1 7 7 N 1.31513 * 120.00103 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99944 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46913 * 90.00606 * 8 6 4 10 10 H 1.48499 * 109.47201 * 210.00213 * 8 6 4 11 11 H 1.48495 * 109.47231 * 330.00709 * 8 6 4 12 12 N 1.46898 * 109.47223 * 119.99947 * 2 1 3 13 13 C 1.46901 * 111.00443 * 176.04521 * 12 2 1 14 14 C 1.46906 * 110.99820 * 299.99834 * 12 2 1 15 15 H 1.09000 * 109.96969 * 53.72964 * 14 12 2 16 16 C 1.54283 * 109.98371 * 175.00005 * 14 12 2 17 17 C 1.54986 * 103.74797 * 142.47307 * 16 14 12 18 18 C 1.54892 * 102.33369 * 322.91116 * 17 16 14 19 19 C 1.51446 * 109.98257 * 292.41615 * 14 12 2 20 20 O 1.20763 * 126.34371 * 60.98722 * 19 14 12 21 21 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47057 * 300.00273 * 1 2 3 23 23 H 1.09007 * 109.46908 * 60.00057 * 1 2 3 24 24 H 0.97010 * 119.99890 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 26 26 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 27 27 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 28 28 H 1.09003 * 110.56444 * 261.03618 * 16 14 12 29 29 H 1.08993 * 110.57328 * 23.75723 * 16 14 12 30 30 H 1.08997 * 110.83092 * 81.12661 * 17 16 14 31 31 H 1.08998 * 110.83124 * 204.70267 * 17 16 14 32 32 H 1.08998 * 110.43824 * 156.36075 * 18 17 16 33 33 H 1.08996 * 110.44225 * 278.89208 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9434 0.8299 -2.6034 8 14 2.3213 -1.1206 -4.0079 9 1 1.3427 -2.1619 -4.4117 10 1 2.4865 -0.1417 -5.1122 11 1 3.6292 -1.7586 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4211 15 1 0.4639 0.0772 2.3941 16 6 1.9699 -0.8409 3.6618 17 6 2.3288 0.2432 4.7096 18 6 2.9983 1.3357 3.8394 19 6 2.1964 1.3366 2.5500 20 8 2.0944 2.2540 1.7713 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 0.7093 1.1615 -3.4845 25 1 3.8163 -1.3721 2.0501 26 1 3.9192 0.2043 1.2300 27 1 3.8069 -1.2916 0.2719 28 1 1.1422 -1.4559 4.0151 29 1 2.8374 -1.4610 3.4363 30 1 1.4306 0.6283 5.1922 31 1 3.0293 -0.1479 5.4475 32 1 2.9316 2.3069 4.3298 33 1 4.0388 1.0793 3.6404 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251499852.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:59 Heat of formation + Delta-G solvation = -52.536761 kcal Electronic energy + Delta-G solvation = -14845.359286 eV Core-core repulsion = 12484.361012 eV Total energy + Delta-G solvation = -2360.998274 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.35003 -38.19679 -36.54703 -34.39917 -31.13930 -29.47582 -27.92844 -26.76502 -25.32595 -22.13098 -21.67263 -19.65080 -18.50215 -17.56524 -16.97507 -16.80099 -15.83314 -15.56759 -15.28422 -14.83354 -14.21957 -13.99459 -13.64066 -13.42069 -13.21265 -12.95917 -12.77558 -12.50729 -12.26445 -12.05591 -12.03591 -12.01391 -11.65587 -11.23974 -11.05327 -10.77075 -10.52981 -8.80002 -8.11718 -6.25108 0.94099 1.39905 1.41278 1.51487 2.40422 3.13952 3.18701 3.34611 3.71266 3.90314 4.18178 4.37041 4.40978 4.54618 4.65318 4.70210 4.84990 4.87462 4.94727 4.98943 5.05191 5.18250 5.21096 5.31791 5.44036 5.53434 5.71254 5.75785 6.21115 6.27521 6.54794 6.68056 6.91331 7.43507 8.94516 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.050309 B = 0.009254 C = 0.008870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.430758 B = 3024.997462 C = 3155.873288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.203 3.797 3 H -0.021 1.021 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.004 3.996 7 N -0.923 5.923 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.516 5.516 13 C 0.031 3.969 14 C 0.008 3.992 15 H 0.093 0.907 16 C -0.105 4.105 17 C -0.103 4.103 18 C -0.178 4.178 19 C 0.321 3.679 20 O -0.490 6.490 21 H 0.035 0.965 22 H 0.020 0.980 23 H 0.055 0.945 24 H 0.260 0.740 25 H 0.098 0.902 26 H -0.005 1.005 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -3.749 14.527 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 H -0.003 1.003 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.194 4.194 7 N -0.563 5.563 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.241 5.241 13 C -0.117 4.117 14 C -0.102 4.102 15 H 0.110 0.890 16 C -0.142 4.142 17 C -0.141 4.141 18 C -0.216 4.216 19 C 0.197 3.803 20 O -0.364 6.364 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.013 0.987 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.480 -3.636 13.967 14.846 hybrid contribution 0.292 0.927 -1.408 1.711 sum 3.772 -2.709 12.558 13.390 Atomic orbital electron populations 1.21609 0.97781 0.99004 0.99171 1.19210 0.92533 0.91472 0.87211 1.00308 1.21472 1.31254 1.12304 0.90915 0.91751 1.25832 0.95471 0.95777 1.02300 1.70083 1.37961 1.24320 1.23926 0.85448 0.78990 0.78094 0.78445 1.19819 1.21241 1.18921 1.62442 1.10491 1.49926 1.01206 1.22405 0.87574 0.98524 1.03225 1.23337 1.01255 0.91754 0.93816 0.88962 1.22434 1.03253 0.97365 0.91162 1.22443 1.01625 0.93480 0.96539 1.22988 1.01131 1.03062 0.94381 1.26813 0.78914 0.88562 0.86022 1.90415 1.57177 1.42162 1.46656 0.94565 0.96090 0.92571 0.93089 0.88392 0.98670 0.91933 0.88945 0.89364 0.89781 0.87048 0.88373 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.22 8.76 71.98 0.63 -5.59 16 2 C 0.20 11.00 1.82 44.17 0.08 11.08 16 3 H -0.02 -1.30 6.00 -2.39 -0.01 -1.31 16 4 C -0.52 -29.90 7.88 25.60 0.20 -29.70 16 5 H 0.06 3.58 6.40 -2.91 -0.02 3.56 16 6 C 0.00 0.25 5.30 84.65 0.45 0.70 16 7 N -0.92 -56.66 11.32 21.45 0.24 -56.41 16 8 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.52 -22.25 4.63 -876.61 -4.06 -26.30 16 13 C 0.03 1.17 8.71 127.69 1.11 2.29 16 14 C 0.01 0.27 2.69 44.84 0.12 0.39 16 15 H 0.09 3.45 6.03 -2.39 -0.01 3.44 16 16 C -0.10 -2.35 6.35 31.71 0.20 -2.15 16 17 C -0.10 -1.72 6.95 31.92 0.22 -1.50 16 18 C -0.18 -4.16 6.72 30.86 0.21 -3.96 16 19 C 0.32 11.89 5.53 29.71 0.16 12.06 16 20 O -0.49 -23.83 15.99 -1.46 -0.02 -23.85 16 21 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.02 0.99 6.28 -2.39 -0.01 0.98 16 23 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 24 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 25 H 0.10 2.81 6.01 -2.39 -0.01 2.80 16 26 H -0.01 -0.22 7.01 -2.39 -0.02 -0.23 16 27 H 0.06 2.63 6.10 -2.38 -0.01 2.62 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.89 5.77 -2.39 -0.01 1.88 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -72.02 256.34 2.67 -69.34 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.10 Total: 6.33 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 3.39 Total: -16.37 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -3.81 Total: -82.72 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.02 Total: -23.85 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.02 2.67 -69.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251499852.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.807 kcal (2) G-P(sol) polarization free energy of solvation -72.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds