Wall clock time and date at job start Thu Apr 9 2020 14:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 112.90786 * 2 1 4 4 C 1.54052 * 113.69251 * 131.32419 * 2 1 3 5 5 C 1.53787 * 87.07647 * 139.94483 * 4 2 1 6 6 C 1.53781 * 113.61164 * 228.74699 * 2 1 3 7 7 H 1.08997 * 113.61561 * 105.39338 * 6 2 1 8 8 N 1.46499 * 113.61486 * 334.56606 * 6 2 1 9 9 C 1.34784 * 119.99893 * 156.53020 * 8 6 2 10 10 O 1.21283 * 119.99649 * 0.02562 * 9 8 6 11 11 C 1.50694 * 119.99988 * 180.02562 * 9 8 6 12 12 C 1.53001 * 109.47168 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 H 1.08991 * 109.47208 * 191.25179 * 1 2 3 22 22 H 1.09005 * 109.46962 * 311.25656 * 1 2 3 23 23 H 1.09001 * 109.47026 * 71.24918 * 1 2 3 24 24 H 1.08997 * 113.61154 * 25.39989 * 4 2 1 25 25 H 1.09000 * 113.62162 * 254.49043 * 4 2 1 26 26 H 1.08998 * 113.61717 * 220.02015 * 5 4 2 27 27 H 1.08998 * 113.68572 * 89.12903 * 5 4 2 28 28 H 0.96991 * 120.00466 * 336.53257 * 8 6 2 29 29 H 1.09002 * 109.47054 * 60.00213 * 11 9 8 30 30 H 1.08998 * 109.47224 * 299.99701 * 11 9 8 31 31 H 1.09007 * 109.46922 * 59.99702 * 12 11 9 32 32 H 1.09003 * 109.46836 * 300.00457 * 12 11 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1491 -0.9315 1.0594 5 6 3.1941 -1.3144 -0.0019 6 6 2.1460 -0.9291 -1.0593 7 1 2.5638 -0.3990 -1.9152 8 7 1.2703 -2.0372 -1.4485 9 6 1.4324 -2.6360 -2.6451 10 8 2.3036 -2.2577 -3.3994 11 6 0.5313 -3.7755 -3.0457 12 6 0.9243 -4.2710 -4.4389 13 6 0.0236 -5.4109 -4.8392 14 1 -0.7519 -5.7480 -4.1674 15 6 0.1895 -6.0235 -6.0633 16 7 1.1335 -5.6126 -6.8817 17 14 -0.9266 -7.4369 -6.5592 18 1 -0.5452 -7.9178 -7.9115 19 1 -0.7857 -8.5455 -5.5812 20 1 -2.3364 -6.9709 -6.5794 21 1 -0.3633 -1.0078 0.2005 22 1 -0.3633 0.6777 0.7726 23 1 -0.3633 0.3304 -0.9731 24 1 1.4984 -1.7566 1.3490 25 1 2.5691 -0.4021 1.9146 26 1 3.4466 -2.3747 -0.0035 27 1 4.0731 -0.6699 -0.0034 28 1 0.5739 -2.3400 -0.8452 29 1 -0.5032 -3.4325 -3.0609 30 1 0.6339 -4.5894 -2.3280 31 1 1.9589 -4.6138 -4.4242 32 1 0.8215 -3.4568 -5.1564 33 1 1.2504 -6.0439 -7.7426 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379417795.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:07:48 Heat of formation + Delta-G solvation = -61.541060 kcal Electronic energy + Delta-G solvation = -13819.424482 eV Core-core repulsion = 11458.035752 eV Total energy + Delta-G solvation = -2361.388730 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.27649 -39.34453 -35.56371 -34.22038 -32.82112 -30.74230 -28.00835 -25.89028 -23.88274 -23.64130 -21.39713 -19.96476 -18.88773 -17.69229 -16.74992 -16.54745 -16.31669 -15.89030 -15.12371 -14.77456 -14.40158 -14.24002 -14.12528 -13.84854 -13.23882 -12.78333 -12.51896 -12.50874 -12.45328 -11.91625 -11.80003 -11.64696 -11.32783 -11.29031 -11.09465 -10.71787 -10.56007 -9.95974 -8.17689 -6.32187 1.42418 1.47213 1.54971 1.70259 2.24090 2.45408 3.15155 3.51315 3.71140 3.96947 4.00014 4.06033 4.49005 4.52352 4.55714 4.63235 4.73915 4.87888 4.96377 5.03346 5.08167 5.13260 5.15545 5.38958 5.41154 5.49067 5.62483 5.71361 5.85385 6.17486 6.63004 6.86121 7.36376 7.38642 8.94949 Molecular weight = 211.13amu Principal moments of inertia in cm(-1) A = 0.065130 B = 0.005590 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.803712 B = 5007.759049 C = 5179.807428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.111 0.889 4 C -0.122 4.122 5 C -0.157 4.157 6 C 0.101 3.899 7 H 0.066 0.934 8 N -0.698 5.698 9 C 0.511 3.489 10 O -0.591 6.591 11 C -0.119 4.119 12 C 0.042 3.958 13 C -0.545 4.545 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.976 3.024 18 H -0.288 1.288 19 H -0.262 1.262 20 H -0.262 1.262 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.414 0.586 29 H 0.105 0.895 30 H 0.104 0.896 31 H -0.019 1.019 32 H -0.019 1.019 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 9.074 18.274 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.129 0.871 4 C -0.159 4.159 5 C -0.196 4.196 6 C -0.004 4.004 7 H 0.084 0.916 8 N -0.351 5.351 9 C 0.300 3.700 10 O -0.471 6.471 11 C -0.159 4.159 12 C 0.004 3.996 13 C -0.582 4.582 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.213 1.213 19 H -0.187 1.187 20 H -0.186 1.186 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.252 0.748 29 H 0.123 0.877 30 H 0.122 0.878 31 H -0.001 1.001 32 H 0.000 1.000 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.010 9.317 17.588 20.005 hybrid contribution -0.238 -0.733 -0.701 1.042 sum -2.248 8.584 16.887 19.076 Atomic orbital electron populations 1.21683 0.93846 1.02565 1.01955 1.22939 0.96703 0.98780 0.94208 0.87100 1.23010 0.97174 0.99148 0.96569 1.23373 0.97988 1.01612 0.96623 1.22100 0.92754 0.88780 0.96811 0.91573 1.45578 1.36643 1.34961 1.17911 1.21380 0.84033 0.83658 0.80923 1.90647 1.36796 1.66049 1.53587 1.21636 0.99333 0.95498 0.99385 1.18687 0.94966 0.94602 0.91317 1.21690 1.17119 1.16905 1.02527 0.90536 1.26159 0.97112 1.00571 0.96600 1.70181 1.34326 1.43413 1.09941 0.85350 0.78896 0.78615 0.77229 1.21327 1.18656 1.18649 0.91973 0.90654 0.93483 0.89437 0.89447 0.92547 0.88587 0.74777 0.87704 0.87759 1.00069 1.00032 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.10 71.98 0.66 -1.49 16 2 C -0.11 -1.79 4.33 -10.17 -0.04 -1.83 16 3 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -1.79 7.53 31.22 0.24 -1.56 16 5 C -0.16 -3.31 7.88 31.12 0.25 -3.06 16 6 C 0.10 2.57 4.16 45.52 0.19 2.76 16 7 H 0.07 2.09 7.50 -2.39 -0.02 2.08 16 8 N -0.70 -19.53 4.80 -440.03 -2.11 -21.64 16 9 C 0.51 20.46 7.83 87.65 0.69 21.15 16 10 O -0.59 -30.16 15.60 -3.04 -0.05 -30.20 16 11 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 12 C 0.04 2.39 4.26 29.85 0.13 2.51 16 13 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 14 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 15 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 16 N -0.94 -60.33 13.29 21.45 0.28 -60.04 16 17 Si 0.98 44.57 29.54 68.60 2.03 46.59 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 H 0.06 0.84 6.61 -2.39 -0.02 0.83 16 22 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.09 1.18 7.97 -2.39 -0.02 1.17 16 25 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.41 8.65 7.12 -92.71 -0.66 7.99 16 29 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 31 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 32 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 33 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -76.19 276.44 3.53 -72.66 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.42 Total: 9.96 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 2.96 Total: -17.32 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -1.83 Total: -81.69 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -76.19 3.53 -72.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379417795.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.115 kcal (2) G-P(sol) polarization free energy of solvation -76.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds