Wall clock time and date at job start Thu Apr 9 2020 14:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 H 1.09001 * 109.87872 * 306.19288 * 3 2 1 5 5 C 1.54322 * 110.02363 * 67.30571 * 3 2 1 6 6 C 1.55136 * 103.01504 * 141.76617 * 5 3 2 7 7 C 1.54908 * 101.65604 * 324.34490 * 6 5 3 8 8 N 1.47439 * 109.88799 * 185.15607 * 3 2 1 9 9 C 1.46897 * 111.00079 * 3.69348 * 8 3 2 10 10 H 1.09003 * 109.47673 * 40.41074 * 9 8 3 11 11 C 1.53006 * 109.46842 * 280.41073 * 9 8 3 12 12 C 1.53004 * 109.47483 * 160.41158 * 9 8 3 13 13 C 1.50696 * 109.46897 * 294.99854 * 12 9 8 14 14 H 1.08000 * 120.00122 * 359.97438 * 13 12 9 15 15 C 1.37883 * 119.99762 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99668 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00003 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.46887 * 269.99735 * 17 15 13 19 19 H 1.48504 * 109.47040 * 149.99739 * 17 15 13 20 20 H 1.48498 * 109.47064 * 30.00209 * 17 15 13 21 21 H 1.09002 * 109.46859 * 52.48520 * 1 2 3 22 22 H 1.09000 * 109.47078 * 172.47734 * 1 2 3 23 23 H 1.08997 * 109.47463 * 292.48432 * 1 2 3 24 24 H 1.08999 * 109.47112 * 240.00439 * 2 1 3 25 25 H 1.08996 * 109.47054 * 120.00267 * 2 1 3 26 26 H 1.08998 * 110.70402 * 260.14775 * 5 3 2 27 27 H 1.08997 * 110.70055 * 23.38127 * 5 3 2 28 28 H 1.08997 * 110.99400 * 82.44411 * 6 5 3 29 29 H 1.09000 * 110.98644 * 206.25570 * 6 5 3 30 30 H 1.09001 * 110.37684 * 278.24559 * 7 6 5 31 31 H 1.08998 * 110.37262 * 155.90324 * 7 6 5 32 32 H 1.08994 * 109.46632 * 40.06167 * 11 9 8 33 33 H 1.09000 * 109.46941 * 160.06077 * 11 9 8 34 34 H 1.08996 * 109.46907 * 280.05869 * 11 9 8 35 35 H 1.08993 * 109.47436 * 174.99808 * 12 9 8 36 36 H 1.09002 * 109.46569 * 54.99428 * 12 9 8 37 37 H 0.97003 * 119.99811 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9937 -0.8273 5 6 1.6888 2.1272 1.3377 6 6 2.9426 2.9939 1.6264 7 6 4.0785 2.0923 1.0818 8 7 3.5091 1.4551 -0.1246 9 6 4.0343 0.0944 -0.2989 10 1 3.3800 -0.4649 -0.9677 11 6 4.0947 -0.6069 1.0597 12 6 5.4396 0.1631 -0.9003 13 6 5.3636 0.7421 -2.2895 14 1 4.4086 1.0316 -2.7024 15 6 6.5134 0.9022 -3.0334 16 7 6.4472 1.4079 -4.2456 17 14 8.1652 0.4007 -2.3195 18 1 8.7652 1.5544 -1.6026 19 1 9.0702 -0.0250 -3.4173 20 1 7.9731 -0.7259 -1.3714 21 1 -0.3633 0.6258 -0.8152 22 1 -0.3633 -1.0188 -0.1345 23 1 -0.3634 0.3930 0.9495 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.8037 2.7539 1.2290 27 1 1.5434 1.3859 2.1234 28 1 2.8985 3.9377 1.0828 29 1 3.0600 3.1665 2.6962 30 1 4.3490 1.3360 1.8186 31 1 4.9478 2.6947 0.8184 32 1 3.2067 -0.3540 1.6387 33 1 4.1360 -1.6858 0.9101 34 1 4.9846 -0.2803 1.5978 35 1 5.8642 -0.8396 -0.9473 36 1 6.0709 0.7963 -0.2768 37 1 7.2560 1.5202 -4.7692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695777103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:08:56 Heat of formation + Delta-G solvation = -10.874942 kcal Electronic energy + Delta-G solvation = -15081.829970 eV Core-core repulsion = 12858.471383 eV Total energy + Delta-G solvation = -2223.358588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.01741 -35.88478 -34.16975 -34.13265 -30.50419 -29.45137 -28.44003 -25.01642 -23.84869 -22.92386 -21.29540 -19.54480 -18.78061 -17.02170 -16.81988 -16.31419 -15.64752 -15.12704 -14.85374 -14.50137 -14.06559 -13.81893 -13.67671 -13.30551 -13.04790 -12.79894 -12.57915 -12.52611 -12.27689 -12.00479 -11.86514 -11.71656 -11.67179 -11.41704 -11.26036 -11.07161 -10.78110 -10.64163 -8.78266 -8.18077 -6.16607 1.35367 1.36999 1.48339 2.41292 3.13267 3.30195 3.77023 3.88851 3.97315 4.20910 4.29358 4.35136 4.43970 4.50385 4.62836 4.68099 4.69923 4.85810 4.94309 4.99683 5.03728 5.09172 5.13811 5.17763 5.22444 5.23804 5.31914 5.38231 5.39306 5.57704 5.62485 5.76615 6.40837 6.48775 6.61209 6.91026 7.43713 8.99715 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036933 B = 0.009175 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.954739 B = 3050.901271 C = 3178.890429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C 0.069 3.931 4 H 0.054 0.946 5 C -0.122 4.122 6 C -0.123 4.123 7 C 0.031 3.969 8 N -0.536 5.536 9 C 0.084 3.916 10 H 0.072 0.928 11 C -0.176 4.176 12 C -0.001 4.001 13 C -0.488 4.488 14 H 0.031 0.969 15 C -0.007 4.007 16 N -0.960 5.960 17 Si 0.947 3.053 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.247 1.247 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.018 0.982 36 H 0.009 0.991 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -2.197 15.450 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.187 4.187 3 C -0.039 4.039 4 H 0.072 0.928 5 C -0.160 4.160 6 C -0.161 4.161 7 C -0.097 4.097 8 N -0.259 5.259 9 C -0.025 4.025 10 H 0.090 0.910 11 C -0.234 4.234 12 C -0.038 4.038 13 C -0.526 4.526 14 H 0.049 0.951 15 C -0.201 4.201 16 N -0.603 5.603 17 Si 0.771 3.229 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.171 1.171 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.027 0.973 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.944 -1.874 14.859 17.444 hybrid contribution 0.821 -0.310 -0.060 0.880 sum -8.123 -2.184 14.798 17.022 Atomic orbital electron populations 1.21719 0.94256 1.01905 1.02181 1.22465 0.97303 0.96473 1.02466 1.22482 0.87663 0.96110 0.97657 0.92771 1.22805 0.98251 0.98952 0.96024 1.22675 0.94024 0.97978 1.01467 1.23195 0.97969 0.97402 0.91106 1.63547 1.04958 1.19179 1.38253 1.21830 0.96289 0.88542 0.95814 0.90961 1.22675 1.02002 1.01069 0.97628 1.19578 0.94431 0.95393 0.94430 1.21299 0.93543 1.38643 0.99144 0.95110 1.25988 1.03287 0.95640 0.95181 1.70093 1.29484 1.48590 1.12089 0.85712 0.79204 0.79642 0.78331 1.19900 1.21281 1.17093 0.93401 0.92131 0.91311 0.93031 0.89775 0.89896 0.90005 0.91961 0.88817 0.91649 0.93347 0.90455 0.91710 0.92654 0.96357 0.97298 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.65 71.98 0.69 -2.35 16 2 C -0.15 -4.06 3.97 30.60 0.12 -3.94 16 3 C 0.07 2.14 3.20 45.26 0.14 2.29 16 4 H 0.05 1.90 8.13 -2.39 -0.02 1.88 16 5 C -0.12 -2.83 5.76 31.77 0.18 -2.64 16 6 C -0.12 -3.10 7.08 31.98 0.23 -2.88 16 7 C 0.03 1.00 5.85 86.77 0.51 1.51 16 8 N -0.54 -20.71 4.78 -835.52 -3.99 -24.71 16 9 C 0.08 3.30 1.80 44.92 0.08 3.38 16 10 H 0.07 3.02 5.27 -2.39 -0.01 3.00 16 11 C -0.18 -5.22 6.99 71.98 0.50 -4.71 16 12 C 0.00 -0.03 3.50 29.85 0.10 0.07 16 13 C -0.49 -29.32 9.39 25.60 0.24 -29.08 16 14 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 15 C -0.01 -0.40 5.47 84.66 0.46 0.06 16 16 N -0.96 -63.12 13.96 21.45 0.30 -62.82 16 17 Si 0.95 46.52 27.47 68.60 1.88 48.40 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 20 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 21 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.21 7.73 -2.39 -0.02 1.19 16 24 H 0.05 1.68 5.86 -2.39 -0.01 1.66 16 25 H 0.08 2.07 4.75 -2.39 -0.01 2.05 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.61 7.78 -2.39 -0.02 1.59 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.92 4.98 -2.39 -0.01 1.91 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.95 5.19 -2.39 -0.01 1.94 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.63 6.89 -2.39 -0.02 1.61 16 35 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 36 H 0.01 0.43 7.17 -2.39 -0.02 0.41 16 37 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -69.58 273.84 2.43 -67.16 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.97 Total: 10.24 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 3.27 Total: -38.27 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -3.69 Total: -87.53 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.88 Total: 48.40 kcal Total: -69.58 2.43 -67.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.281 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds