Wall clock time and date at job start Thu Apr 9 2020 14:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47048 * 2 1 4 4 H 1.08993 * 110.41764 * 57.31546 * 3 2 1 5 5 C 1.54906 * 110.36912 * 179.62433 * 3 2 1 6 6 C 1.55139 * 101.64955 * 155.90094 * 5 3 2 7 7 C 1.54317 * 103.02125 * 324.34597 * 6 5 3 8 8 N 1.47444 * 107.23004 * 22.28507 * 7 6 5 9 9 C 1.46904 * 111.00170 * 123.26102 * 8 7 6 10 10 H 1.09000 * 109.46855 * 186.13846 * 9 8 7 11 11 C 1.53004 * 109.46734 * 306.13153 * 9 8 7 12 12 C 1.52993 * 109.47466 * 66.13374 * 9 8 7 13 13 C 1.50704 * 109.47239 * 65.00119 * 12 9 8 14 14 H 1.08002 * 119.99775 * 0.02562 * 13 12 9 15 15 C 1.37872 * 119.99804 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99516 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00623 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46924 * 90.00029 * 17 15 13 19 19 H 1.48498 * 109.47428 * 210.00458 * 17 15 13 20 20 H 1.48507 * 109.46714 * 330.00500 * 17 15 13 21 21 H 1.09005 * 109.46916 * 299.99943 * 1 2 3 22 22 H 1.09008 * 109.46947 * 59.99777 * 1 2 3 23 23 H 1.08994 * 109.47178 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47155 * 240.00324 * 2 1 3 25 25 H 1.08994 * 109.46980 * 120.00170 * 2 1 3 26 26 H 1.09004 * 110.99215 * 37.81584 * 5 3 2 27 27 H 1.08996 * 110.99526 * 273.99259 * 5 3 2 28 28 H 1.09004 * 110.70886 * 205.96274 * 6 5 3 29 29 H 1.09002 * 110.70646 * 82.72996 * 6 5 3 30 30 H 1.08993 * 109.89357 * 262.88017 * 7 6 5 31 31 H 1.09008 * 109.89007 * 141.68307 * 7 6 5 32 32 H 1.08994 * 109.47090 * 186.76943 * 11 9 8 33 33 H 1.09003 * 109.47327 * 306.77260 * 11 9 8 34 34 H 1.09004 * 109.46628 * 66.77246 * 11 9 8 35 35 H 1.08997 * 109.47383 * 185.00286 * 12 9 8 36 36 H 1.09005 * 109.46997 * 305.00380 * 12 9 8 37 37 H 0.97001 * 119.99758 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6467 1.9849 0.8597 5 6 3.5889 1.4669 0.0095 6 6 3.8842 2.8573 -0.6121 7 6 2.7617 3.0155 -1.6592 8 7 1.6594 2.1231 -1.2560 9 6 0.4079 2.8742 -1.0895 10 1 -0.3611 2.2144 -0.6879 11 6 0.6366 4.0383 -0.1233 12 6 -0.0446 3.4185 -2.4459 13 6 -0.3876 2.2698 -3.3591 14 1 -0.2927 1.2532 -3.0071 15 6 -0.8225 2.5167 -4.6439 16 7 -1.1223 1.5142 -5.4407 17 14 -0.9872 4.2751 -5.2527 18 1 0.2930 4.7077 -5.8684 19 1 -2.0727 4.3494 -6.2633 20 1 -1.3128 5.1659 -4.1100 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.9958 0.6678 -0.6102 27 1 3.9742 1.4044 1.0272 28 1 4.8628 2.8649 -1.0921 29 1 3.8187 3.6394 0.1443 30 1 3.1299 2.7283 -2.6440 31 1 2.4145 4.0487 -1.6774 32 1 -0.3155 4.5224 0.0941 33 1 1.0726 3.6621 0.8022 34 1 1.3155 4.7597 -0.5780 35 1 -0.9231 4.0491 -2.3096 36 1 0.7597 4.0065 -2.8881 37 1 -1.4286 1.6879 -6.3445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695777107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:08:58 Heat of formation + Delta-G solvation = -6.831063 kcal Electronic energy + Delta-G solvation = -15163.851146 eV Core-core repulsion = 12940.667915 eV Total energy + Delta-G solvation = -2223.183232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.31175 -34.28600 -32.83081 -32.06226 -28.67468 -27.76479 -27.38476 -23.41830 -22.45738 -20.96778 -19.77491 -18.40230 -16.63036 -16.30825 -14.90847 -14.21889 -14.05867 -13.42965 -13.24160 -12.78565 -12.54659 -12.29377 -12.28588 -12.00217 -11.62986 -11.38365 -11.21784 -10.88087 -10.72312 -10.67956 -10.36302 -10.19157 -10.14210 -9.87922 -9.61201 -9.39947 -8.91639 -8.38442 -7.41462 -5.87278 -3.80864 3.37813 3.45328 3.47861 4.56241 4.58393 5.00283 5.00989 5.29209 5.47549 5.51777 5.64237 5.71048 5.76059 5.82096 5.85039 5.96710 5.98936 6.06098 6.13678 6.19537 6.36178 6.42141 6.44678 6.48279 6.57443 6.68190 6.75761 6.88243 7.00988 7.18328 7.41589 7.82847 7.90226 8.05157 8.76573 9.26068 9.76132 11.26679 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032150 B = 0.010495 C = 0.009444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.721557 B = 2667.224064 C = 2964.106751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.102 4.102 3 C 0.065 3.935 4 H 0.049 0.951 5 C -0.124 4.124 6 C -0.143 4.143 7 C 0.044 3.956 8 N -0.492 5.492 9 C 0.082 3.918 10 H 0.085 0.915 11 C -0.188 4.188 12 C -0.007 4.007 13 C -0.488 4.488 14 H 0.081 0.919 15 C 0.061 3.939 16 N -0.908 5.908 17 Si 0.872 3.128 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.269 1.269 21 H 0.040 0.960 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 1.980 11.660 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.140 4.140 3 C -0.043 4.043 4 H 0.067 0.933 5 C -0.162 4.162 6 C -0.181 4.181 7 C -0.084 4.084 8 N -0.216 5.216 9 C -0.027 4.027 10 H 0.103 0.897 11 C -0.247 4.247 12 C -0.044 4.044 13 C -0.526 4.526 14 H 0.099 0.901 15 C -0.138 4.138 16 N -0.549 5.549 17 Si 0.700 3.300 18 H -0.207 1.207 19 H -0.217 1.217 20 H -0.194 1.194 21 H 0.059 0.941 22 H 0.104 0.896 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.127 1.574 11.080 13.268 hybrid contribution 0.031 1.625 0.127 1.631 sum 7.159 3.199 11.207 13.677 Atomic orbital electron populations 1.21938 0.95860 1.01091 1.02706 1.21387 0.96350 0.95303 1.00920 1.22647 0.93671 0.95614 0.92369 0.93293 1.22716 0.95880 0.97474 1.00107 1.22812 0.99503 0.97045 0.98747 1.22783 0.90561 0.96616 0.98445 1.63603 1.02146 1.28041 1.27772 1.22020 0.91735 0.92401 0.96498 0.89726 1.22610 1.01504 1.00732 0.99857 1.19678 0.95392 0.97053 0.92275 1.21066 1.41578 0.93945 0.96006 0.90139 1.25004 0.95677 0.96132 0.96997 1.69915 1.47065 1.30435 1.07469 0.86916 0.77695 0.86726 0.78677 1.20654 1.21698 1.19384 0.94101 0.89648 0.93670 0.91300 0.93161 0.90825 0.91902 0.91505 0.92308 0.90871 0.92498 0.92753 0.93605 0.92901 0.96621 0.97128 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.78 37.16 0.33 -2.27 16 2 C -0.10 -1.56 5.66 -26.73 -0.15 -1.71 16 3 C 0.07 1.02 2.35 -66.19 -0.16 0.87 16 4 H 0.05 0.75 5.95 -51.93 -0.31 0.44 16 5 C -0.12 -1.67 6.50 -24.59 -0.16 -1.83 16 6 C -0.14 -1.95 6.94 -24.91 -0.17 -2.12 16 7 C 0.04 0.76 5.57 -2.84 -0.02 0.75 16 8 N -0.49 -9.30 4.33 -215.48 -0.93 -10.23 16 9 C 0.08 1.62 1.79 -67.71 -0.12 1.50 16 10 H 0.08 1.72 5.23 -51.93 -0.27 1.45 16 11 C -0.19 -3.11 8.56 37.16 0.32 -2.79 16 12 C -0.01 -0.16 3.43 -27.88 -0.10 -0.25 16 13 C -0.49 -13.83 9.39 -34.44 -0.32 -14.15 16 14 H 0.08 2.48 7.40 -52.49 -0.39 2.09 16 15 C 0.06 1.80 5.47 -17.82 -0.10 1.71 16 16 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 17 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 20 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.08 1.70 5.34 -51.92 -0.28 1.42 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.06 1.00 4.83 -51.92 -0.25 0.75 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.68 6.20 -51.93 -0.32 0.36 16 34 H 0.05 0.86 6.25 -51.93 -0.32 0.53 16 35 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 36 H 0.01 0.25 6.21 -51.93 -0.32 -0.07 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 275.20 15.07 4.15 4.15 Total: -1.00 -30.15 275.20 -7.56 -37.71 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.23 Total: -1.10 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.65 Total: -20.31 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.16 Total: -37.92 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.15 -7.56 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.883 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds