Wall clock time and date at job start Thu Apr 9 2020 14:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.47048 * 2 1 4 4 H 1.08993 * 110.41764 * 57.31546 * 3 2 1 5 5 C 1.54906 * 110.36912 * 179.62433 * 3 2 1 6 6 C 1.55139 * 101.64955 * 155.90094 * 5 3 2 7 7 C 1.54317 * 103.02125 * 324.34597 * 6 5 3 8 8 N 1.47444 * 107.23004 * 22.28507 * 7 6 5 9 9 C 1.46904 * 111.00170 * 123.26102 * 8 7 6 10 10 H 1.09000 * 109.46855 * 186.13846 * 9 8 7 11 11 C 1.53004 * 109.46734 * 306.13153 * 9 8 7 12 12 C 1.52993 * 109.47466 * 66.13374 * 9 8 7 13 13 C 1.50704 * 109.47239 * 65.00119 * 12 9 8 14 14 H 1.08002 * 119.99775 * 0.02562 * 13 12 9 15 15 C 1.37872 * 119.99804 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99516 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00623 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46924 * 90.00029 * 17 15 13 19 19 H 1.48498 * 109.47428 * 210.00458 * 17 15 13 20 20 H 1.48507 * 109.46714 * 330.00500 * 17 15 13 21 21 H 1.09005 * 109.46916 * 299.99943 * 1 2 3 22 22 H 1.09008 * 109.46947 * 59.99777 * 1 2 3 23 23 H 1.08994 * 109.47178 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47155 * 240.00324 * 2 1 3 25 25 H 1.08994 * 109.46980 * 120.00170 * 2 1 3 26 26 H 1.09004 * 110.99215 * 37.81584 * 5 3 2 27 27 H 1.08996 * 110.99526 * 273.99259 * 5 3 2 28 28 H 1.09004 * 110.70886 * 205.96274 * 6 5 3 29 29 H 1.09002 * 110.70646 * 82.72996 * 6 5 3 30 30 H 1.08993 * 109.89357 * 262.88017 * 7 6 5 31 31 H 1.09008 * 109.89007 * 141.68307 * 7 6 5 32 32 H 1.08994 * 109.47090 * 186.76943 * 11 9 8 33 33 H 1.09003 * 109.47327 * 306.77260 * 11 9 8 34 34 H 1.09004 * 109.46628 * 66.77246 * 11 9 8 35 35 H 1.08997 * 109.47383 * 185.00286 * 12 9 8 36 36 H 1.09005 * 109.46997 * 305.00380 * 12 9 8 37 37 H 0.97001 * 119.99758 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6467 1.9849 0.8597 5 6 3.5889 1.4669 0.0095 6 6 3.8842 2.8573 -0.6121 7 6 2.7617 3.0155 -1.6592 8 7 1.6594 2.1231 -1.2560 9 6 0.4079 2.8742 -1.0895 10 1 -0.3611 2.2144 -0.6879 11 6 0.6366 4.0383 -0.1233 12 6 -0.0446 3.4185 -2.4459 13 6 -0.3876 2.2698 -3.3591 14 1 -0.2927 1.2532 -3.0071 15 6 -0.8225 2.5167 -4.6439 16 7 -1.1223 1.5142 -5.4407 17 14 -0.9872 4.2751 -5.2527 18 1 0.2930 4.7077 -5.8684 19 1 -2.0727 4.3494 -6.2633 20 1 -1.3128 5.1659 -4.1100 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.9958 0.6678 -0.6102 27 1 3.9742 1.4044 1.0272 28 1 4.8628 2.8649 -1.0921 29 1 3.8187 3.6394 0.1443 30 1 3.1299 2.7283 -2.6440 31 1 2.4145 4.0487 -1.6774 32 1 -0.3155 4.5224 0.0941 33 1 1.0726 3.6621 0.8022 34 1 1.3155 4.7597 -0.5780 35 1 -0.9231 4.0491 -2.3096 36 1 0.7597 4.0065 -2.8881 37 1 -1.4286 1.6879 -6.3445 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695777107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:08:58 Heat of formation + Delta-G solvation = -26.036022 kcal Electronic energy + Delta-G solvation = -15164.683936 eV Core-core repulsion = 12940.667915 eV Total energy + Delta-G solvation = -2224.016021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65029 -35.91765 -34.25418 -33.95482 -30.37141 -29.25924 -28.70235 -24.97190 -24.19828 -22.17731 -21.17253 -19.86739 -18.77706 -17.71284 -16.43788 -16.01494 -15.37640 -15.00890 -14.60516 -14.32992 -14.14038 -13.81291 -13.72869 -13.46644 -13.33585 -12.77926 -12.62119 -12.55632 -12.20413 -11.91117 -11.76457 -11.74366 -11.54671 -11.39408 -11.28164 -11.23153 -10.80508 -10.63783 -8.79091 -8.15837 -6.13931 1.35585 1.36949 1.47830 2.42096 3.14660 3.30257 3.81338 3.85743 4.16138 4.21094 4.34073 4.40199 4.44085 4.56803 4.61821 4.63929 4.80146 4.85469 4.93408 5.02300 5.06604 5.11083 5.13719 5.17602 5.22334 5.28145 5.30937 5.42123 5.52808 5.55553 5.69301 5.78337 6.44381 6.48616 6.64320 6.95247 7.46400 9.01501 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032150 B = 0.010495 C = 0.009444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.721557 B = 2667.224064 C = 2964.106751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 C 0.064 3.936 4 H 0.061 0.939 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.039 3.961 8 N -0.524 5.524 9 C 0.085 3.915 10 H 0.073 0.927 11 C -0.177 4.177 12 C -0.003 4.003 13 C -0.484 4.484 14 H 0.039 0.961 15 C -0.004 4.004 16 N -0.958 5.958 17 Si 0.941 3.059 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.249 1.249 21 H 0.057 0.943 22 H 0.041 0.959 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.506 3.680 13.818 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.044 4.044 4 H 0.079 0.921 5 C -0.155 4.155 6 C -0.169 4.169 7 C -0.089 4.089 8 N -0.248 5.248 9 C -0.023 4.023 10 H 0.091 0.909 11 C -0.236 4.236 12 C -0.041 4.041 13 C -0.523 4.523 14 H 0.057 0.943 15 C -0.198 4.198 16 N -0.601 5.601 17 Si 0.766 3.234 18 H -0.199 1.199 19 H -0.215 1.215 20 H -0.173 1.173 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.347 3.282 13.263 16.011 hybrid contribution -0.358 0.971 -0.536 1.166 sum 7.990 4.253 12.727 15.617 Atomic orbital electron populations 1.21856 0.96889 1.01070 1.01315 1.21401 0.95380 0.95700 1.01288 1.22737 0.95460 0.95058 0.91157 0.92112 1.22711 0.93906 0.97106 1.01780 1.22749 0.98529 0.97684 0.97955 1.22760 0.91589 0.95976 0.98548 1.63445 1.02284 1.28796 1.30290 1.21789 0.92175 0.93561 0.94798 0.90925 1.22469 1.02233 0.99239 0.99656 1.19620 0.95313 0.95299 0.93858 1.21306 1.40412 0.93784 0.96759 0.94257 1.25921 0.95711 1.00836 0.97365 1.70085 1.48948 1.33104 1.07992 0.85796 0.77826 0.81221 0.78558 1.19940 1.21491 1.17274 0.92369 0.93966 0.93079 0.93659 0.89910 0.91527 0.88791 0.90082 0.90442 0.93659 0.92753 0.92034 0.91461 0.92437 0.96548 0.97065 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 8.78 71.98 0.63 -4.40 16 2 C -0.10 -2.96 5.66 30.60 0.17 -2.79 16 3 C 0.06 1.86 2.35 45.39 0.11 1.97 16 4 H 0.06 1.65 5.95 -2.39 -0.01 1.64 16 5 C -0.12 -2.78 6.50 31.98 0.21 -2.57 16 6 C -0.13 -3.17 6.94 31.77 0.22 -2.95 16 7 C 0.04 1.32 5.57 86.65 0.48 1.80 16 8 N -0.52 -19.60 4.33 -835.64 -3.62 -23.23 16 9 C 0.09 3.33 1.79 44.91 0.08 3.41 16 10 H 0.07 2.99 5.23 -2.39 -0.01 2.98 16 11 C -0.18 -5.37 8.56 71.98 0.62 -4.75 16 12 C 0.00 -0.16 3.43 29.85 0.10 -0.06 16 13 C -0.48 -28.41 9.39 25.60 0.24 -28.17 16 14 H 0.04 2.57 7.40 -2.91 -0.02 2.55 16 15 C 0.00 -0.23 5.47 84.65 0.46 0.23 16 16 N -0.96 -62.28 13.96 21.45 0.30 -61.98 16 17 Si 0.94 46.06 27.47 68.60 1.88 47.95 16 18 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.25 -11.29 6.54 99.48 0.65 -10.63 16 21 H 0.06 1.65 8.14 -2.38 -0.02 1.64 16 22 H 0.04 1.75 5.34 -2.38 -0.01 1.74 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.83 4.83 -2.38 -0.01 1.82 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.75 6.20 -2.39 -0.01 1.74 16 34 H 0.06 1.69 6.25 -2.39 -0.01 1.67 16 35 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 36 H 0.01 0.53 6.21 -2.38 -0.01 0.51 16 37 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -67.40 275.20 2.85 -64.55 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.97 Total: 10.99 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 3.32 Total: -38.28 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -3.32 Total: -85.21 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.95 kcal Total: -67.40 2.85 -64.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.512 kcal (2) G-P(sol) polarization free energy of solvation -67.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds