Wall clock time and date at job start Thu Apr 9 2020 14:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47310 * 2 1 4 4 C 1.53004 * 109.47151 * 119.99885 * 2 1 3 5 5 C 1.50702 * 109.46838 * 293.64648 * 4 2 1 6 6 H 1.07999 * 120.00264 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99924 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00024 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47326 * 90.00085 * 9 7 5 11 11 H 1.48500 * 109.47076 * 209.99874 * 9 7 5 12 12 H 1.48499 * 109.47006 * 329.99556 * 9 7 5 13 13 C 1.53000 * 109.47229 * 239.99375 * 2 1 3 14 14 H 1.09003 * 109.46429 * 179.62546 * 13 2 1 15 15 C 1.53034 * 109.46733 * 299.60722 * 13 2 1 16 16 C 1.53109 * 109.28136 * 179.18915 * 15 13 2 17 17 C 1.53116 * 109.16674 * 302.34648 * 16 15 13 18 18 C 1.53047 * 109.27548 * 57.65271 * 17 16 15 19 19 N 1.46847 * 109.52384 * 300.82432 * 18 17 16 20 20 C 1.46894 * 111.00147 * 185.84250 * 19 18 17 21 21 H 1.09007 * 109.46904 * 59.99837 * 1 2 3 22 22 H 1.08994 * 109.47479 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46860 * 300.00325 * 1 2 3 24 24 H 1.09001 * 109.47356 * 173.64727 * 4 2 1 25 25 H 1.08995 * 109.47238 * 53.64404 * 4 2 1 26 26 H 0.97003 * 120.00487 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.50015 * 299.13892 * 15 13 2 28 28 H 1.09006 * 109.50002 * 59.20623 * 15 13 2 29 29 H 1.09006 * 109.52070 * 62.25634 * 16 15 13 30 30 H 1.09007 * 109.52253 * 182.37494 * 16 15 13 31 31 H 1.08999 * 109.50589 * 177.59368 * 17 16 15 32 32 H 1.08999 * 109.50174 * 297.67851 * 17 16 15 33 33 H 1.08997 * 109.45943 * 60.83786 * 18 17 16 34 34 H 1.08998 * 109.46051 * 180.81917 * 18 17 16 35 35 H 1.09002 * 109.47010 * 298.62765 * 20 19 18 36 36 H 1.08994 * 109.47296 * 58.62409 * 20 19 18 37 37 H 1.08998 * 109.47431 * 178.63098 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6701 0.0742 2.4747 6 1 1.1254 1.0012 2.3727 7 6 2.0262 -0.3820 3.7261 8 7 2.6891 -1.5110 3.8504 9 14 1.5671 0.6036 5.2450 10 1 0.2363 0.1647 5.7364 11 1 2.5837 0.3822 6.3047 12 1 1.5165 2.0474 4.9016 13 6 2.0400 -0.7214 -1.2492 14 1 3.1300 -0.7155 -1.2524 15 6 1.5379 -2.1670 -1.2440 16 6 2.0338 -2.8789 -2.5055 17 6 1.5436 -2.1156 -3.7390 18 6 2.0456 -0.6714 -3.6720 19 7 1.5437 -0.0337 -2.4481 20 6 1.8902 1.3934 -2.4179 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.1240 -0.8208 1.1943 25 1 1.5868 -1.7108 1.3080 26 1 2.9393 -1.8322 4.7308 27 1 1.9193 -2.6815 -0.3619 28 1 0.4480 -2.1736 -1.2262 29 1 3.1235 -2.9068 -2.5035 30 1 1.6435 -3.8965 -2.5268 31 1 1.9292 -2.5935 -4.6397 32 1 0.4539 -2.1220 -3.7617 33 1 3.1356 -0.6658 -3.6636 34 1 1.6862 -0.1213 -4.5416 35 1 2.9745 1.5043 -2.4263 36 1 1.4677 1.8885 -3.2922 37 1 1.4857 1.8465 -1.5128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260696226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:16 Heat of formation + Delta-G solvation = -22.087003 kcal Electronic energy + Delta-G solvation = -14906.910107 eV Core-core repulsion = 12683.065328 eV Total energy + Delta-G solvation = -2223.844779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17817 -34.77433 -33.23695 -32.18959 -29.09087 -26.73026 -26.40147 -24.04354 -22.85106 -21.79632 -19.84443 -18.07987 -16.40282 -15.23436 -14.94067 -14.41357 -14.26357 -14.01535 -13.88935 -12.83995 -12.47177 -12.39816 -12.09222 -11.81296 -11.67751 -11.37789 -11.01340 -10.85829 -10.75506 -10.64291 -10.44409 -10.22068 -10.03497 -9.78607 -9.40268 -9.03757 -8.84543 -8.28922 -7.90364 -5.94972 -3.95725 3.34516 3.40777 3.44007 4.28316 4.50821 5.08128 5.14413 5.23865 5.40792 5.46585 5.63109 5.73225 5.76787 5.81615 5.91654 6.01974 6.07831 6.17060 6.23059 6.27703 6.32147 6.46884 6.56027 6.62010 6.71564 6.86337 7.06873 7.20151 7.27776 7.51374 7.58218 7.73742 7.90848 8.05682 8.50407 9.10687 9.67356 11.16451 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048078 B = 0.007789 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.248440 B = 3593.935870 C = 3912.800502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.029 3.971 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.091 3.909 14 H 0.032 0.968 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.114 4.114 18 C 0.056 3.944 19 N -0.536 5.536 20 C 0.023 3.977 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.010 0.990 25 H 0.021 0.979 26 H 0.259 0.741 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.058 0.942 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 0.593 -13.158 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.016 4.016 14 H 0.050 0.950 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.072 4.072 19 N -0.260 5.260 20 C -0.126 4.126 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.108 0.443 -13.033 13.210 hybrid contribution 0.790 0.556 0.924 1.337 sum -1.318 0.999 -12.109 12.222 Atomic orbital electron populations 1.21636 0.95728 1.00827 0.99963 1.21305 0.96044 0.98750 0.93864 0.92620 1.19163 0.95797 0.95682 0.90232 1.21258 1.35348 1.07298 0.91162 0.92683 1.25008 0.95370 0.95109 0.99025 1.69964 1.39639 1.20759 1.23296 0.86649 0.78132 0.80526 0.83019 1.20730 1.21346 1.19965 1.21765 0.96057 0.94040 0.89749 0.95041 1.21705 1.01701 0.94451 0.97172 1.21621 1.00261 0.98725 0.95415 1.21560 1.01473 0.94584 0.97575 1.22047 0.96826 0.95334 0.93022 1.61960 1.59895 1.02193 1.01984 1.22394 0.98219 0.89333 1.02619 0.93945 0.93692 0.92977 0.97116 0.96113 0.93145 0.90560 0.91049 0.92720 0.92268 0.92344 0.91345 0.95603 0.91558 0.96272 0.92339 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.43 37.16 0.31 -2.14 16 2 C -0.08 -1.68 1.62 -90.62 -0.15 -1.83 16 3 H 0.06 1.18 6.28 -51.93 -0.33 0.86 16 4 C 0.03 0.74 3.88 -27.88 -0.11 0.63 16 5 C -0.51 -14.44 8.42 -34.44 -0.29 -14.73 16 6 H 0.05 1.52 7.15 -52.49 -0.38 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.09 1.66 1.67 -67.72 -0.11 1.55 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.11 -1.93 4.67 -26.66 -0.12 -2.06 16 16 C -0.12 -1.73 6.00 -26.62 -0.16 -1.89 16 17 C -0.11 -1.44 6.09 -26.65 -0.16 -1.60 16 18 C 0.06 0.75 5.46 -3.83 -0.02 0.73 16 19 N -0.54 -8.45 3.98 -234.93 -0.93 -9.39 16 20 C 0.02 0.33 9.00 60.06 0.54 0.87 16 21 H 0.04 0.76 7.34 -51.93 -0.38 0.38 16 22 H 0.04 0.88 6.42 -51.93 -0.33 0.54 16 23 H 0.05 1.09 7.04 -51.93 -0.37 0.72 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.02 0.56 6.80 -51.93 -0.35 0.21 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.08 1.45 6.62 -51.93 -0.34 1.11 16 28 H 0.07 1.24 6.40 -51.93 -0.33 0.91 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 37 H 0.08 1.22 5.85 -51.93 -0.30 0.92 16 LS Contribution 278.40 15.07 4.20 4.20 Total: -1.00 -29.34 278.40 -7.87 -37.21 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -6.48 Total: -3.56 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -0.37 Total: -18.96 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.20 Total: -35.70 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.34 -7.87 -37.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.123 kcal (2) G-P(sol) polarization free energy of solvation -29.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds