Wall clock time and date at job start Thu Apr 9 2020 14:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47310 * 2 1 4 4 C 1.53004 * 109.47151 * 119.99885 * 2 1 3 5 5 C 1.50702 * 109.46838 * 293.64648 * 4 2 1 6 6 H 1.07999 * 120.00264 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99924 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00024 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00024 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47326 * 90.00085 * 9 7 5 11 11 H 1.48500 * 109.47076 * 209.99874 * 9 7 5 12 12 H 1.48499 * 109.47006 * 329.99556 * 9 7 5 13 13 C 1.53000 * 109.47229 * 239.99375 * 2 1 3 14 14 H 1.09003 * 109.46429 * 179.62546 * 13 2 1 15 15 C 1.53034 * 109.46733 * 299.60722 * 13 2 1 16 16 C 1.53109 * 109.28136 * 179.18915 * 15 13 2 17 17 C 1.53116 * 109.16674 * 302.34648 * 16 15 13 18 18 C 1.53047 * 109.27548 * 57.65271 * 17 16 15 19 19 N 1.46847 * 109.52384 * 300.82432 * 18 17 16 20 20 C 1.46894 * 111.00147 * 185.84250 * 19 18 17 21 21 H 1.09007 * 109.46904 * 59.99837 * 1 2 3 22 22 H 1.08994 * 109.47479 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46860 * 300.00325 * 1 2 3 24 24 H 1.09001 * 109.47356 * 173.64727 * 4 2 1 25 25 H 1.08995 * 109.47238 * 53.64404 * 4 2 1 26 26 H 0.97003 * 120.00487 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.50015 * 299.13892 * 15 13 2 28 28 H 1.09006 * 109.50002 * 59.20623 * 15 13 2 29 29 H 1.09006 * 109.52070 * 62.25634 * 16 15 13 30 30 H 1.09007 * 109.52253 * 182.37494 * 16 15 13 31 31 H 1.08999 * 109.50589 * 177.59368 * 17 16 15 32 32 H 1.08999 * 109.50174 * 297.67851 * 17 16 15 33 33 H 1.08997 * 109.45943 * 60.83786 * 18 17 16 34 34 H 1.08998 * 109.46051 * 180.81917 * 18 17 16 35 35 H 1.09002 * 109.47010 * 298.62765 * 20 19 18 36 36 H 1.08994 * 109.47296 * 58.62409 * 20 19 18 37 37 H 1.08998 * 109.47431 * 178.63098 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6701 0.0742 2.4747 6 1 1.1254 1.0012 2.3727 7 6 2.0262 -0.3820 3.7261 8 7 2.6891 -1.5110 3.8504 9 14 1.5671 0.6036 5.2450 10 1 0.2363 0.1647 5.7364 11 1 2.5837 0.3822 6.3047 12 1 1.5165 2.0474 4.9016 13 6 2.0400 -0.7214 -1.2492 14 1 3.1300 -0.7155 -1.2524 15 6 1.5379 -2.1670 -1.2440 16 6 2.0338 -2.8789 -2.5055 17 6 1.5436 -2.1156 -3.7390 18 6 2.0456 -0.6714 -3.6720 19 7 1.5437 -0.0337 -2.4481 20 6 1.8902 1.3934 -2.4179 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.1240 -0.8208 1.1943 25 1 1.5868 -1.7108 1.3080 26 1 2.9393 -1.8322 4.7308 27 1 1.9193 -2.6815 -0.3619 28 1 0.4480 -2.1736 -1.2262 29 1 3.1235 -2.9068 -2.5035 30 1 1.6435 -3.8965 -2.5268 31 1 1.9292 -2.5935 -4.6397 32 1 0.4539 -2.1220 -3.7617 33 1 3.1356 -0.6658 -3.6636 34 1 1.6862 -0.1213 -4.5416 35 1 2.9745 1.5043 -2.4263 36 1 1.4677 1.8885 -3.2922 37 1 1.4857 1.8465 -1.5128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260696226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:09:16 Heat of formation + Delta-G solvation = -39.364546 kcal Electronic energy + Delta-G solvation = -14907.659318 eV Core-core repulsion = 12683.065328 eV Total energy + Delta-G solvation = -2224.593989 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53150 -36.46808 -34.52898 -34.14777 -30.59644 -28.65627 -27.61438 -25.80627 -24.31588 -23.25405 -21.15905 -19.63255 -18.53628 -16.66486 -16.53652 -16.00712 -15.77363 -15.32146 -15.20688 -14.35857 -14.16719 -13.89643 -13.62713 -13.32171 -13.20120 -12.80088 -12.67121 -12.55654 -12.34411 -12.28309 -12.05164 -11.65745 -11.46601 -11.33530 -11.20672 -10.83473 -10.66909 -10.50110 -9.17954 -8.16988 -6.26100 1.39495 1.40609 1.51389 2.41862 3.05457 3.16127 3.89290 3.95652 4.03323 4.20515 4.38874 4.44674 4.55018 4.57402 4.67458 4.73007 4.79307 4.87640 4.93131 4.99986 5.09679 5.11023 5.12254 5.24015 5.29999 5.36639 5.46755 5.51676 5.55356 5.58337 5.83225 5.90179 6.19331 6.28834 6.36084 6.89996 7.41895 8.94897 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048078 B = 0.007789 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.248440 B = 3593.935870 C = 3912.800502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 H 0.051 0.949 4 C 0.038 3.962 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.100 3.900 14 H 0.012 0.988 15 C -0.111 4.111 16 C -0.120 4.120 17 C -0.109 4.109 18 C 0.052 3.948 19 N -0.538 5.538 20 C 0.021 3.979 21 H 0.065 0.935 22 H 0.042 0.958 23 H 0.035 0.965 24 H -0.022 1.022 25 H -0.002 1.002 26 H 0.262 0.738 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.091 0.909 35 H 0.016 0.984 36 H 0.086 0.914 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 1.413 -14.569 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.069 0.931 4 C 0.001 3.999 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.189 1.189 13 C -0.008 4.008 14 H 0.030 0.970 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.146 4.146 18 C -0.075 4.075 19 N -0.263 5.263 20 C -0.127 4.127 21 H 0.084 0.916 22 H 0.061 0.939 23 H 0.055 0.945 24 H -0.004 1.004 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.110 0.890 35 H 0.035 0.965 36 H 0.105 0.895 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.036 1.272 -14.464 14.834 hybrid contribution 1.106 0.290 1.335 1.757 sum -1.930 1.563 -13.129 13.362 Atomic orbital electron populations 1.21510 0.94452 1.00737 1.00253 1.21126 0.96931 0.98020 0.93122 0.93088 1.19002 0.93535 0.95009 0.92371 1.21659 1.35275 1.07620 0.92300 0.92305 1.25936 0.95201 0.96177 1.02556 1.70102 1.40731 1.22464 1.24214 0.85521 0.78032 0.79269 0.78690 1.19805 1.20902 1.18858 1.21505 0.94767 0.94571 0.89965 0.96996 1.21628 1.01406 0.94000 0.97818 1.21604 1.00108 0.99445 0.94556 1.21557 1.01601 0.93867 0.97601 1.22201 0.96816 0.96095 0.92421 1.61962 1.59825 1.02749 1.01748 1.22443 0.98258 0.88700 1.03276 0.91607 0.93942 0.94540 1.00408 0.98321 0.92969 0.93692 0.91186 0.93017 0.90792 0.89518 0.91143 0.95860 0.89035 0.96490 0.89494 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.43 71.98 0.61 -3.79 16 2 C -0.07 -3.11 1.62 -10.79 -0.02 -3.13 16 3 H 0.05 2.20 6.28 -2.39 -0.01 2.19 16 4 C 0.04 2.06 3.88 29.85 0.12 2.17 16 5 C -0.53 -30.58 8.42 25.60 0.22 -30.37 16 6 H 0.06 3.27 7.15 -2.91 -0.02 3.25 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 8 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 9 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.10 3.66 1.67 44.94 0.07 3.73 16 14 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 15 C -0.11 -3.84 4.67 30.64 0.14 -3.70 16 16 C -0.12 -3.21 6.00 30.67 0.18 -3.02 16 17 C -0.11 -2.40 6.09 30.65 0.19 -2.21 16 18 C 0.05 1.25 5.46 86.33 0.47 1.73 16 19 N -0.54 -16.00 3.98 -897.18 -3.57 -19.57 16 20 C 0.02 0.58 9.00 127.69 1.15 1.72 16 21 H 0.07 2.25 7.34 -2.38 -0.02 2.23 16 22 H 0.04 1.65 6.42 -2.39 -0.02 1.64 16 23 H 0.04 1.51 7.04 -2.39 -0.02 1.49 16 24 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 25 H 0.00 -0.09 6.80 -2.39 -0.02 -0.10 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.04 1.81 6.62 -2.39 -0.02 1.79 16 28 H 0.07 2.42 6.40 -2.38 -0.02 2.40 16 29 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 35 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 1.87 8.13 -2.39 -0.02 1.85 16 37 H 0.06 1.93 5.85 -2.39 -0.01 1.91 16 Total: -1.00 -63.84 278.40 3.34 -60.50 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.01 Total: 5.99 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 3.59 Total: -36.48 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -3.28 Total: -77.11 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -63.84 3.34 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.135 kcal (2) G-P(sol) polarization free energy of solvation -63.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds